Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1010 ATGGTCAACACGGGTTCAATGCAAATGTCTCCTGATGTTAGGCTTAACAGTAATATTGGATTCAGTTGTTTCCATCGTAATCGGATGGGGGTTGGTCGATTGCATTTGGTCACCATAAATCTTTCACCATGTAGTTTGAAGCAAGATTCTTCAACGCTCCATCTTTTAAGGAGATTACACGCCCCAATAAGGCATGTGCCTTCCAGATGTAATGTTTTCATATGCCGGTCTGTCCTAATACCAGGTGGAGGGAGTGGGACTCCACTCATGAAATCTGCTAGTGTTATGTTAACACGGTCATATGATGCTTTACAAGGAAGCCCTATTCTGATTCGATTGATCCCAGCCCTTGGTATCATTGCTTTTGCTGTTTGCGGTCTTGAGCCACTCCTTCGTCTTAGCAGGATTTTATTCCTTCAAAGGACTGACAGTAGTTGGAAGAAAAGTACTTCACGATATATTATGGCATCTTATTTTCAGCCATTGCTGTTGTGGTCTGGGGCAATGCTTATATGCAGGGCATTAGATCCACTGGTGCTACCATCTGTGACCAGCCAGGTTGTAAAGCAGCGGCTGCTGAATTTTGTGAGATCTTTGTCAACTGTGATCTCATTTGCTTACTGTTTATCAAGCTTAATTCAACAAGCACAAAGATTCTTTCTGGAGACAAATGACTCCAGTGGTGCAAGAAATGTGGGCCTTGATTTTGCTGGGAAGGCAGTATATACTGCCGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGTGGTTTGGGCACAGTGTTGCTCACTCTTGCAGGTCGTGAGATATTTACAAACTTTCTTTCAAGCATAATGATCCATGCTACTAGGCCATTTATTGTGAACGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTTGAGCATGTAGGTTGGTGGTCACCAACCATTGTGAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCATAAGTTCACTGTAAATGTTGTGAGAAATCTGACTCAAAAATCTCACTGGCGTATCAAGAGTTACATTGCTATCAGTCACCTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGTCTAAAAATCCTCAAGTAGAGCAGCAAAAATTGCACCGAAGGGTCTTTTTGGAGGATGTCAATCCTGAAAATCAGGCTCTTAGGATATTAATATCTTGCTTTGTGAAAACTTCCCATTTTGAAGAGTACCTGTGTGTTAAGGAGGCAATCCTTTTGGACCTTCTCAGAGTTGTCAGTCATCATCGAGCCCGGCTAGCCACTCCTATCCGCACAGTTCAGAAAATATACAGTGAGGCTGACTCAGAAAATATACCATTTGGGGACACCATTTTCACTCGATCCAGAGCAGCAAATCGTCCATTTCTACTGATAGAACCACCATATAAAGTTAATGGAGAAGATAAAGTTAAGCCTTCAACACGTTCAAGTCGTCCAAATGAGGAAAAAGATGCCAAGATTGATGAAACATTGGCATCTGACACCAAAGGAGATGAGAATATTGCAGCAACATCAACCTCCTTACATGGTGTGAACTCCAAGGATAAATCCAAGTCAACTCCTGAAACGCAAATCCAAAACACGGGTTCTGATAGCTCAGCTGCCAAAACCGTACAGCCTAAAAAGGAAAGTGCAGGAGATACAGGAAAGGGAAGTACAGTTCCTGTTTCTAAAAACAACGCACAAAGTGCTGTGTCTGAAACTTCTGTTACTTCCCATGAGACCACTTCTGCTACTTCTTCACAGTCAAAGCAAGATGAAGAGAAATCTGCTGTGTCTTCGGCATCAGTTAGGCCTTCGTTGGAAGAGAACATTCTTCTTGGGGTTGCTCTAGAAGGCTCAAAACGAACTCTTCCAATTGAAGAAGAAATGTCTCCATCTTCTATCCCTGCAGAGTCTCAAGAATTTGCTGTCCAACGAAATGGGAGTGGAGTTCCTGCTAGCAAGGATAAGAAGGATGGTCAGATATCTCCATTTCCAACTAGCAAACAGAATGACTAG 2091 0.4237 MVNTGSMQMSPDVRLNSNIGFSCFHRNRMGVGRLHLVTINLSPCSLKQDSSTLHLLRRLHAPIRHVPSRCNVFICRSVLIPGGGSGTPLMKSASVMLTRSYDALQGSPILIRLIPALGIIAFAVCGLEPLLRLSRILFLQRTDSSWKKSTSRYIMASYFQPLLLWSGAMLICRALDPLVLPSVTSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQRFFLETNDSSGARNVGLDFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLEDVNPENQALRILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTRSRAANRPFLLIEPPYKVNGEDKVKPSTRSSRPNEEKDAKIDETLASDTKGDENIAATSTSLHGVNSKDKSKSTPETQIQNTGSDSSAAKTVQPKKESAGDTGKGSTVPVSKNNAQSAVSETSVTSHETTSATSSQSKQDEEKSAVSSASVRPSLEENILLGVALEGSKRTLPIEEEMSPSSIPAESQEFAVQRNGSGVPASKDKKDGQISPFPTSKQND* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1010 696 MobiDBLite consensus disorder prediction 580 630 - -
Apr5g1010 696 MobiDBLite consensus disorder prediction 494 696 - -
Apr5g1010 696 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Apr5g1010 696 MobiDBLite consensus disorder prediction 494 525 - -
Apr5g1010 696 Gene3D - 194 296 - -
Apr5g1010 696 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 688 IPR045042 -
Apr5g1010 696 MobiDBLite consensus disorder prediction 657 671 - -
Apr5g1010 696 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Apr5g1010 696 Gene3D - 297 350 IPR023408 -
Apr5g1010 696 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 688 - -
Apr5g1010 696 MobiDBLite consensus disorder prediction 527 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1010 Apr-Chr5 14701824 14708341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1010 1 668 Mechanosensitive Ion Channel Family AT1G58200 56.579 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1010 K22047 - gmx:100777815 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1010 5 14701824 14708341 Apr5g1010 5 14701824 14708341 ECH