Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0997 ATGTACGACACTATGAACCAGATCACCCCCGCCGAAGACAACGACGGCGCCGACTCCGTCGACAACCACCACATTCATTACAATTCGCACGCCCTCGAAGACGGTAACGGCGGAGGGGGAGTCGAAGATGTTTCCACCGATTCCGTTTACGTTTCAGGCCCTGAAATCTCTATCCAAGATTCTAGCCAACTGACGCTTTCGTTTCGTGGACAAGTTTATGTCTTCGACGCCGTTACGCCCGATAAGGTCCAAGCGGTGTTGTTACTGTTGGGAGGAAGTGAATTAACTTCGAATTCGCAATGTGTGGAGATGTCGCCTCAAAATCAGAGGGGTGCAACGGAATATCCTGCAAGGTGTAGTCAACCGCAGCGAGCGGCGTCGTTAAGTAGGTTCCGACAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCTCTCAGGATGCATCGAAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATGGTTGGGGTGCAGATCAAGAGTCAGGGCAGGATGGTGTTCCATCAGAAACCTCATGCACGCATTGTGGAATAAGTTCAAAATCCACTCCAATGATGAGAAGGGGTCCATCTGGTCCAAGGTCACTTTGCAACGCTTGTGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGAGATCTTTCTAGGAGAAACCAGGAACACTCTCTTGCACCACCCGAGCAGGTTGGTGAGGGTAATGACTTGGACTGTCGGACTGCTAACCCTGCACATAACAATCTTGTTAATGATAACACAGCTTTGGTATCCGATCAGTGA 831 0.485 MYDTMNQITPAEDNDGADSVDNHHIHYNSHALEDGNGGGGVEDVSTDSVYVSGPEISIQDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTSNSQCVEMSPQNQRGATEYPARCSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANGWGADQESGQDGVPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSRRNQEHSLAPPEQVGEGNDLDCRTANPAHNNLVNDNTALVSDQ* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0997 276 Pfam CCT motif 124 166 IPR010402 GO:0005515
Apr5g0997 276 ProSiteProfiles Tify domain profile. 57 92 IPR010399 -
Apr5g0997 276 MobiDBLite consensus disorder prediction 183 205 - -
Apr5g0997 276 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 237 - -
Apr5g0997 276 PANTHER GATA TRANSCRIPTION FACTOR 28 13 259 IPR045280 GO:0006355
Apr5g0997 276 SMART tify_2 57 92 IPR010399 -
Apr5g0997 276 PANTHER GATA TRANSCRIPTION FACTOR 25 13 259 - -
Apr5g0997 276 ProSitePatterns GATA-type zinc finger domain. 192 219 IPR000679 GO:0006355|GO:0043565
Apr5g0997 276 CDD ZnF_GATA 191 237 IPR000679 GO:0006355|GO:0043565
Apr5g0997 276 Pfam GATA zinc finger 192 228 IPR000679 GO:0006355|GO:0043565
Apr5g0997 276 SMART GATA_3 186 239 IPR000679 GO:0006355|GO:0043565
Apr5g0997 276 ProSiteProfiles CCT domain profile. 124 166 IPR010402 GO:0005515
Apr5g0997 276 Gene3D - 186 241 IPR013088 GO:0006355|GO:0008270
Apr5g0997 276 MobiDBLite consensus disorder prediction 1 22 - -
Apr5g0997 276 Pfam tify domain 61 91 IPR010399 -
Apr5g0997 276 ProSiteProfiles GATA-type zinc finger domain profile. 186 244 IPR000679 GO:0006355|GO:0043565
Apr5g0997 276 MobiDBLite consensus disorder prediction 157 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0997 Apr-Chr5 14552255 14556047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0997 61 242 Tify Gene Family AT4G24470 70.109 6.31e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr5g0997 CCT 3.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0997 - - pvu:PHAVU_009G035400g 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0997 5 14552255 14556047 Apr5g0997 5 14552255 14556047 ECH
Apr9g1012 9 19291802 19297051 Apr5g0997 5 14552255 14556047 PCT