Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0996 ATGGCGACTCTGAATTCGCAGCCGCTGCAGTTCGAGGACCCAGCGATAGCCGTCAACGACGACGACGACGGTGGTGTTGCTGATGTTATGGACGAGCTGGAGGATGTTAATGTTAATTCAGTGAACGTTGCGAGTGCAAAGCACGATGCAGTTGCTATGCCTTCGCGAACTAGCGAACTCACTCTCTCTTTCGAGGGTGAGGTTTATGTATTTCCCGCTGTCACGCCTCAGAAGGTGCAAGCTGTCCTGCTGCTTTTGGGAGGACGAGATGTGCAGGCAGACATGCCTACAGTTGAACTCCCGTTTGATCAAAGTAACAGGGGCATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTGGTTAGGTTCCGTGAGAAACGCAAAGAAAGATGTTTCGACAAGAAAATTAGGTATTCTGTGAGGAAAGAGGTGGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCATCCTTGAAGGAAAGCTCAGGTTCTTCTAATTGGGATTCTGCACAGAGTTCTGGTCATGATGGAACTCCTCATTCTGAATCTCTACGTAGATGTCAACATTGTGGTGTCAATGAAAACAATACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGGACTTTATGCAATGCATGTGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTCAGTAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTGTTGATGTCAAGCCAACTGTTCCTGAAGAGGAATTGCCCAGCATCCATGATGAGCAAGGTATTTCTGAAGATCCTTCCAAGGCCATTGCTGCTGACGGTTCTAGTAATCATGCTGTAAACCCCAGTGAAGAGGAATTGCCTGAAACTGCAGAACATTTTACTAACACAATGCCACTGGGAATTGGTCATTCTTCAGCAAACGATGATGAGCAGGAACCTCTGGTCGAGCTTTCTAATCCTTCATATACAGATATTGACCTTCCTGGAAACTTTGATTAG 1026 0.4717 MATLNSQPLQFEDPAIAVNDDDDGGVADVMDELEDVNVNSVNVASAKHDAVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQADMPTVELPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGSSNWDSAQSSGHDGTPHSESLRRCQHCGVNENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPVDVKPTVPEEELPSIHDEQGISEDPSKAIAADGSSNHAVNPSEEELPETAEHFTNTMPLGIGHSSANDDEQEPLVELSNPSYTDIDLPGNFD* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0996 341 MobiDBLite consensus disorder prediction 252 272 - -
Apr5g0996 341 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 341 - -
Apr5g0996 341 ProSiteProfiles GATA-type zinc finger domain profile. 186 245 IPR000679 GO:0006355|GO:0043565
Apr5g0996 341 Pfam GATA zinc finger 192 228 IPR000679 GO:0006355|GO:0043565
Apr5g0996 341 MobiDBLite consensus disorder prediction 154 189 - -
Apr5g0996 341 ProSitePatterns GATA-type zinc finger domain. 192 219 IPR000679 GO:0006355|GO:0043565
Apr5g0996 341 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Apr5g0996 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 236 - -
Apr5g0996 341 Gene3D - 186 239 IPR013088 GO:0006355|GO:0008270
Apr5g0996 341 CDD ZnF_GATA 191 235 IPR000679 GO:0006355|GO:0043565
Apr5g0996 341 Pfam CCT motif 121 162 IPR010402 GO:0005515
Apr5g0996 341 PANTHER GATA TRANSCRIPTION FACTOR 28 1 341 IPR045280 GO:0006355
Apr5g0996 341 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
Apr5g0996 341 SMART GATA_3 186 239 IPR000679 GO:0006355|GO:0043565
Apr5g0996 341 Pfam tify domain 55 87 IPR010399 -
Apr5g0996 341 MobiDBLite consensus disorder prediction 230 341 - -
Apr5g0996 341 SMART tify_2 53 88 IPR010399 -
Apr5g0996 341 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0996 Apr-Chr5 14542382 14549272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0996 9 256 Tify Gene Family AT1G51600 47.810 2.13e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr5g0996 CCT 9.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0996 - - gmx:100801328 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0996 5 14542382 14549272 Apr5g0996 5 14542382 14549272 ECH