Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0982 ATGACCACTCTCACTCCCAACCCACACTCCAACTTCCACCATGCCCTACTTCTCCTTCTTTATCTCTTCCTTCTCATACACTCTCCGCCGCCGGCCGCCGCACAGCTCCCCAACACGCTGCCGCCACCGCCGCCGGATAGATTTTCCCGGCTTAAGTTCGATAAGTCCATGGCCATCGTGCTCGTCATCCTCGTCGTCGTCTTCTTCATCCTTGGCTTCCTTTCCGTCTACACTCGCCAGTGCACGGAGCGAAGAATGAGAGGGGGGTTCGATCTCGCTATTCCCATCGTTGGAAGCCACCGCCGGCAGCGAGGGCTTGACCGGGAAATCATCGAAACGTTCCCCACTTTTGTCTACTCCACTGTGAAGAGCCTCAAGATTGGGCGCGCCACGCTAGAATGCGCCGTGTGCTTAAACGAGTTCGAAGACGACGAAACGCTGCGTTTGATCCCCAAGTGCAGCCACGTGTTCCACCACGAATGCATCGACGCTTGGTTGAATAACCACTCCACTTGCCCCGTGTGTCGGGCCAACCTCGTTCCAAAACCCGAAGACCCGTCTTCGGTCGCGATCCAGATTCCGGATCACGAAGGATCCGAATCGGATGAAACCCGATCCGAAACCCGAGTCGGTGACGGTAATGTTAACGGAGAAGTAGTGGCGGATTCTCCAAAGGTGAATAATAATTTAGTTAATCAGAACCGTCCACCTCGGTCAAGGTCAACGGGTTTTAGGATCGCGAGTTGGTTTCCACGCTCTCACTCGACCGGTCACTCGCTGGTTCAACCGGGGGAGAATTACGAGCGCTTCACGCTAAGGTTGCCCCAGGAAGTGCGAAACCAGCTCGTGAGCTCCACGCTAAGCCGCACCAAGAGTTGCGGCGTGAGCGTGACCTTCACGCGCGAGAGCAGTGTGAGGAGGGGTTATAGGACAAGAAGCGTTGGCAGCAGCAGCGATCACGCGAGGGGATATGACCGGTTCGGCCGCACGGACCGGCGTGGGTTTTCTTGGACTCCGCCGTTTATGATTAGAACCGGTTCGAACCGGTCGGCGAAGAGTTCGAAGGATGATACGGGTGAACGATCTTCAGATCGGTTATTTAGGGGTGGTGAGGATTAG 1119 0.5603 MTTLTPNPHSNFHHALLLLLYLFLLIHSPPPAAAQLPNTLPPPPPDRFSRLKFDKSMAIVLVILVVVFFILGFLSVYTRQCTERRMRGGFDLAIPIVGSHRRQRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEDDETLRLIPKCSHVFHHECIDAWLNNHSTCPVCRANLVPKPEDPSSVAIQIPDHEGSESDETRSETRVGDGNVNGEVVADSPKVNNNLVNQNRPPRSRSTGFRIASWFPRSHSTGHSLVQPGENYERFTLRLPQEVRNQLVSSTLSRTKSCGVSVTFTRESSVRRGYRTRSVGSSSDHARGYDRFGRTDRRGFSWTPPFMIRTGSNRSAKSSKDDTGERSSDRLFRGGED* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0982 372 MobiDBLite consensus disorder prediction 310 329 - -
Apr5g0982 372 CDD RING-H2_EL5_like 133 176 - -
Apr5g0982 372 MobiDBLite consensus disorder prediction 338 372 - -
Apr5g0982 372 MobiDBLite consensus disorder prediction 221 239 - -
Apr5g0982 372 PANTHER RING-H2 FINGER PROTEIN ATL11 15 301 - -
Apr5g0982 372 PANTHER RING FINGER DOMAIN-CONTAINING 15 301 - -
Apr5g0982 372 SUPERFAMILY RING/U-box 128 183 - -
Apr5g0982 372 MobiDBLite consensus disorder prediction 186 239 - -
Apr5g0982 372 Pfam Ring finger domain 133 176 IPR001841 -
Apr5g0982 372 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Apr5g0982 372 MobiDBLite consensus disorder prediction 350 372 - -
Apr5g0982 372 SMART ring_2 134 175 IPR001841 -
Apr5g0982 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 181 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0982 Apr-Chr5 14393788 14395435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0982 18 365 Rapid Response to Elicitors AT3G05200 40.054 9.23e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0982 K10664 - gmx:100805815 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0982 5 14393788 14395435 Apr5g0982 5 14393788 14395435 ECH
Apr9g0968 9 18598585 18599754 Apr5g0982 5 14393788 14395435 PCT