Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0981 ATGGCACTAGAGGCTGTGGTTTTCCCACAAGATCCTTTTACTTATTGTTACAAGGATCATTTGTACTCCAACTATGGTTTCCAAGTAGCAGAAGAAGAGAAACTCCTTCTCGGAATCATCAATAACAACATAGAACAGAGTCTGCATGCAAATTGGGATTCTTCTTCCACCTCGATGATGCAAAATGTGAAGGACCAATGGGATTCTCACTCCTCCCCTGAAGCCTGCACCGTTGATCAGTCCATCACCGCACCTTTCCCTCTTCCTCCTTCTTCCACCACCACGGTTCGCCGTAAACGGCGTCGTAGCAAGAACGCGAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACACACATTGCAGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACCTTGCAGTGCTCCGTTCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGATCAAGCGTCTATTATTGGGGGTGCGATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCCATGGAAAGTCAAAGGAAAACGAATGAGAATATTGGCTTAAATGGGTCATCACCCTTTGCGGAGTTCTTCACGTTTCCTCAGTACACAAAGCAGAGCAACAACGGAGGCGCCACGATGGCAGAGAACCAGGCCCAAAAACAATGGGCCGTGGCAGACATTGAAGTTACCATGGTGGATAGCCATGCCAACCTGAAGATACTCTCAAAGAAACGAACCGGGTTGCTTATGAAGATGGTTGTTGGGCTTCAAGGCCTCAGGTTCACCATTCTCCACCTTAATGTTACCACTCTCGACGATATGGCCCTTTACTCAGTTAGTGTAAAGGTAGAGGACGGGTGTCAGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAACTATTACGCAGGGTCCAAGAAGAAGTCACTTTTAACTGA 933 0.4705 MALEAVVFPQDPFTYCYKDHLYSNYGFQVAEEEKLLLGIINNNIEQSLHANWDSSSTSMMQNVKDQWDSHSSPEACTVDQSITAPFPLPPSSTTTVRRKRRRSKNAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMESQRKTNENIGLNGSSPFAEFFTFPQYTKQSNNGGATMAENQAQKQWAVADIEVTMVDSHANLKILSKKRTGLLMKMVVGLQGLRFTILHLNVTTLDDMALYSVSVKVEDGCQLNTVDEIAAAVNQLLRRVQEEVTFN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0981 310 PANTHER MAX DIMERIZATION, MAD 1 310 - -
Apr5g0981 310 Pfam Helix-loop-helix DNA-binding domain 115 166 IPR011598 GO:0046983
Apr5g0981 310 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 310 - -
Apr5g0981 310 Coils Coil 162 182 - -
Apr5g0981 310 Gene3D - 104 186 IPR036638 GO:0046983
Apr5g0981 310 SMART finulus 120 171 IPR011598 GO:0046983
Apr5g0981 310 CDD bHLH_AtFAMA_like 117 180 - -
Apr5g0981 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 177 IPR036638 GO:0046983
Apr5g0981 310 MobiDBLite consensus disorder prediction 83 111 - -
Apr5g0981 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 165 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0981 Apr-Chr5 14378700 14379914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0981 1 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.331 1.56e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g0981 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0981 - - gmx:100805420 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0981 5 14378700 14379914 Apr5g0981 5 14378700 14379914 ECH
Apr9g0965 9 18507876 18509610 Apr5g0981 5 14378700 14379914 PCT