Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0979 ATGGCGCTACTACGTCTTCTCTGTTTCACTTCAACAAATCAATTATCCACACAGCACTATTCCCAATTAACCTCTCACAACAAACCTCATTCCCAATCCATCAACGTCATCACCAATCCCTCTTCCTTACACCTTCAACGTTTATTCCTTGCTCATACCCCAATCCTTATTGCAACCAAACAAACCTCTAATTCCACTCTCAGACTTGCCTCCACTTCCCAACAACAAATTCAAGAAACTGAAGCGGACGCTGAAGAAGAATTTTCTCGCACGAGGTTGCTCGCTCAGAACGTGCCTTGGACAAGCACCCCTGAAGACATTCGCTCTTTGTTCGAGAAACATGGAAAAGTTCTCGAAGTCGAGCTTTCAATGTATAACAAAAACAGAAACCGGGGTTTGGCGTTTGTGGAAATGGGTTCCCCAGAAGAGGCTCTTGCGGCTTTCAACAGTCTCGAAGCGTATGAGTTCGAGGGTCGTGTAATAAAACTAAATTATGCTCGGCCAAAGAAGAAGAAAACACCGCCCCCTGTGAAACCAAAGCCAGAAGTGACATTTAACTTGTTTGTTGCAAACTTGTCCTATGAAGCGAGGTCAAAAGATCTTAGTGAGTTTTTTAATGCGGGAACTGGTAGAGTTGTTTCTGCTGAGGTTGTTTTTCATGATAATCCTAGAAGGTCGTCTGGTTATGGATTTGTGTCCTTCAAGTATAAGAAAGAAGCTGACGCAGCTCTGTCTGAGTTTCAAGGAAAGGATTTTATGGGAAGGCCTATCAGGGTGGCACGGGGTCGGCGATTTGTTCAACAACCGGTGGAGGGGAGGGCAACGTCTGAAGATAACTCCTCTGAGTTGAGTGTGAATGGGACAGAGGGTGACAAAGCTGATTGA 885 0.4497 MALLRLLCFTSTNQLSTQHYSQLTSHNKPHSQSINVITNPSSLHLQRLFLAHTPILIATKQTSNSTLRLASTSQQQIQETEADAEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVELSMYNKNRNRGLAFVEMGSPEEALAAFNSLEAYEFEGRVIKLNYARPKKKKTPPPVKPKPEVTFNLFVANLSYEARSKDLSEFFNAGTGRVVSAEVVFHDNPRRSSGYGFVSFKYKKEADAALSEFQGKDFMGRPIRVARGRRFVQQPVEGRATSEDNSSELSVNGTEGDKAD* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0979 294 Gene3D - 172 278 IPR012677 -
Apr5g0979 294 MobiDBLite consensus disorder prediction 264 294 - -
Apr5g0979 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Apr5g0979 294 SUPERFAMILY RNA-binding domain, RBD 176 268 IPR035979 GO:0003676
Apr5g0979 294 Gene3D - 58 171 IPR012677 -
Apr5g0979 294 MobiDBLite consensus disorder prediction 272 287 - -
Apr5g0979 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 162 IPR000504 GO:0003723
Apr5g0979 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 258 IPR000504 GO:0003723
Apr5g0979 294 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 293 - -
Apr5g0979 294 CDD RRM_SF 97 164 - -
Apr5g0979 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Apr5g0979 294 SMART rrm1_1 92 164 IPR000504 GO:0003723
Apr5g0979 294 SMART rrm1_1 186 260 IPR000504 GO:0003723
Apr5g0979 294 SUPERFAMILY RNA-binding domain, RBD 83 176 IPR035979 GO:0003676
Apr5g0979 294 PANTHER OS08G0483200 PROTEIN 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0979 Apr-Chr5 14365355 14367602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0979 91 259 Eukaryotic Initiation Factors Gene Family AT3G16380 32.768 1.56e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0979 - - gmx:100790439 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0979 5 14365355 14367602 Apr5g0979 5 14365355 14367602 ECH