Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0913 ATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCTTCGGCGTTCCACCTACTCACCAATGCTATGCGTCGTTTCTCTTCCGATGTTACAAACACCATTCCTAACAGTACACGTGAGAGTATGATGAATCAAATGATGTATTCTGACATAAACTCACAAATTGGTAGTTGCATGCCACTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAACCCAGGACAAGGTGGCAAGCTTGTTCGAGCTGCTGGAACAAGTGCAAAGATCTTGAAAGAGCCCACATCAACGTACTGTCTAGTCCAACTCCCGTCAGGTGTTAAAAAATTGATTGATTCTCGATGTAGGGCAACTGTTGGTACCGTGTCTAATCCAAGCCACGATGATCGCAAGCTTAGGAAGGCTGGCCAAAGCCGATGGCTTGGTCGAAGACCAGTTGTTCGAGGAGTGGCCATGAATCCTGTTGATCATCCCCATGGTGGAGGAGAGGGTAAAAGCAAGAGTAGTGGGCGATGGGGGCGAGGATCTCGAACTCCTTGGGGAAAACCAACCAAGAGTGGGTACAAGACTGGACCCATGAAACGCAGAAGGTAG 600 0.4817 MAVSLWRSRTASSAFHLLTNAMRRFSSDVTNTIPNSTRESMMNQMMYSDINSQIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSTYCLVQLPSGVKKLIDSRCRATVGTVSNPSHDDRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGRGSRTPWGKPTKSGYKTGPMKRRR* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0913 199 ProSitePatterns Ribosomal protein L2 signature. 147 158 IPR022671 GO:0003735|GO:0005840|GO:0006412
Apr5g0913 199 PANTHER RIBOSOMAL PROTEIN L2 36 199 IPR002171 GO:0003735|GO:0005840|GO:0006412
Apr5g0913 199 SUPERFAMILY Translation proteins SH3-like domain 54 191 IPR008991 -
Apr5g0913 199 SMART Ribosomal_L2_C_2 52 185 IPR022669 GO:0003735|GO:0005840|GO:0006412
Apr5g0913 199 MobiDBLite consensus disorder prediction 152 199 - -
Apr5g0913 199 Gene3D - 48 124 IPR014722 -
Apr5g0913 199 Gene3D Ribosomal protein L2, domain 3 125 199 IPR014726 -
Apr5g0913 199 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 36 199 - -
Apr5g0913 199 TIGRFAM rplB_bact: ribosomal protein uL2 48 197 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Apr5g0913 199 Pfam Ribosomal Proteins L2, C-terminal domain 53 183 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0913 Apr-Chr5 13463260 13474646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0913 44 164 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 42.636 7.65e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0913 - - gmx:100792418 332.028