Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0855 ATGGAAGACATAAGCAGGTGGCTATCCTTCTATGTGAATGAGAGTGTAAACCATGACTTTGCCATCAGAAGGTATTGCCCGGCTAGAATGGAGCAAGAGCAAGGAGGAGAATGCCAAGGCAAAGAGGCATTAGTACTTGATGACACTGAATTATGTTCTTCTGATGCTACCAGCACTCCTTGGTTGGCTTCATCAGAGGTTGATGACTTTGTTGACAGCTTCATCAACATGGATCAGTATGAGTATGAAGATCAAGGGTCCCAAGAGAGGCATCAAAGTTTTGATCACTTTGTGGTGAATGATGAGGATGAGGCTGATGCATACTCCACGGTGAATGATATATTTGGATATGTTCCAATTACTATGGAGGATGAAGAATTGGAGATGTATGAATGTGTCACAACAGTCATGGAGGAGGAAGAAGTTGAAATGAATGGCTCTTTTGGTGCTATACCTGAGCTTGTGCCTTGTCCACAAGAGCCCAGCCTTGGTATGGACCAAGGGTTAGACTTGGTTCATATGCTGTTGGCTTGTGCTGAGGCTGTGGGGTGCAGAGACAACCAGCAGGCAGAGTTGTTACTTAGCAGAATTTGGGCTTTGGCAAGTCCTTCAGGAGACTCATTGCAGCGAGTCTCCTACTGCTTTGCCACAGGATTGAAGTCTAGGTTATCACTTCTTCCTCAAAATACACTCACAACTTCTGCTATTGATGTGCCTTTGATCACTAGGGACAATAAGCTGGAAGCCTTTCAGCTTCTTTACCAAACCACACCTTATATTGCATTTGGTTTCATGGCTGCCAATGAGGCCATATACCAAGCATCACAAGGAAAGAGCTCAATACACATAGTTGATTTGGGAATGGAGCATACCCTTCAGTGGCCTTCCCTGATAAGGGCCCTTGCTTCAAGGCCTGATGGTCCTCCAAAGCTCCGGATCACAGGATTAACCGGCGATGAAGACAATCTAAAACTTCAAGCTAGCATGAATGTGCTTGTGGAGGAAGCAAGCTCATTAGGAATACCTCTTGAATTCCACATAATTTCTGATCCTGCAATTTCATCACTTCTTACTATGGAGAAGCTGAGCTTGAGAGAAGGTGAAGCTCTATTCGTTAATAGTATCTTGCAGTTACACAAATATGTCAAAGAAAGTAGAGGCTATTTGAAGGAAATTCTCCAATCAATAAAGAAGCTAAGTCCAACTGTACTTACAGTGGTAGAGCAAGACACAAACCATAACGGTCCTTTCTTCCTTGGGAGATTTTTGGAGTCACTTCACTATTACTCGGCCATATTTGATTCTCTTGAGGCAAGTATGCCAAGAAATAGCCAACAGAGATTGAAAATAGAGAGATTACATTTTGCAGATGAAATTCGAAATATTGTAGCTTTTGAGGGACCAGATAGAGTAGAAAGACATGAGAGGGTAGACCAATGGAGAAGGCAATTAGGCCGAGCAGGATTTCAGGTAATGCCACTCATGTGCACAAGTCAAGCTAGAATGATGCTTTCTGTTTATGATTGTGATGGATATACATTGTCCAGTGAGAAGGGTAACCTTCTACTTGGGTGGAAAGAAAGGCCAGTAATGATGGCTTCTGCATGGCAAGTGGCAAGTGTGTGA 1626 0.4323 MEDISRWLSFYVNESVNHDFAIRRYCPARMEQEQGGECQGKEALVLDDTELCSSDATSTPWLASSEVDDFVDSFINMDQYEYEDQGSQERHQSFDHFVVNDEDEADAYSTVNDIFGYVPITMEDEELEMYECVTTVMEEEEVEMNGSFGAIPELVPCPQEPSLGMDQGLDLVHMLLACAEAVGCRDNQQAELLLSRIWALASPSGDSLQRVSYCFATGLKSRLSLLPQNTLTTSAIDVPLITRDNKLEAFQLLYQTTPYIAFGFMAANEAIYQASQGKSSIHIVDLGMEHTLQWPSLIRALASRPDGPPKLRITGLTGDEDNLKLQASMNVLVEEASSLGIPLEFHIISDPAISSLLTMEKLSLREGEALFVNSILQLHKYVKESRGYLKEILQSIKKLSPTVLTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASMPRNSQQRLKIERLHFADEIRNIVAFEGPDRVERHERVDQWRRQLGRAGFQVMPLMCTSQARMMLSVYDCDGYTLSSEKGNLLLGWKERPVMMASAWQVASV* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0855 541 ProSiteProfiles GRAS family profile. 162 537 IPR005202 -
Apr5g0855 541 Pfam GRAS domain family 171 537 IPR005202 -
Apr5g0855 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 539 IPR005202 -
Apr5g0855 541 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 3 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0855 Apr-Chr5 12525741 12527366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0855 166 541 GRAS Transcription Factor Family AT1G66350 39.895 1.65e-81 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr5g0855 GRAS 1.5e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0855 - - gmx:100814931 889.026