Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0854 ATGTCGGTGTTGATCGTAACGAGCTTAGGGGACCTTGTCATTGATTTGCACACCGACAAATGCCCTTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAACGGATGTCTATTTCACACTGTTCAAAAGGATTTTACTGCCCAGACTGGTGATCCAACTGGAACTGGAACTGGTGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATCTGAAGCATTCTATGACTGGAACAGTTGCCATGGCAAGTGCTGGAGAGAATCTGAATGCTTCACAGTTTTATATCTCTCTGCGTGATGACCTTGATTACCTTGATGGGAAGCACACTGTTTTTGGTGAGGTGGCTGAAGGATTTGAGACATTAACTAGAATAAATGAGGCTTATGTGGATGAGAAGGGCAGACCATATAAAAATATCCGAATCAAGCACACATATGTCCTAGAGGATCCTTATGATGATCCTCCTCAGCTAGCTGAGTTCATTCCTGAAGCTTCTCCTGAAGGAAAACCTAAAAATGAGGTTGATGATGAAGTGCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGCAGAACTTCAGGAGGTTATTAGAGCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTATTTGTGTGTAAATTAAACCCAGTTACTGAGGACGATGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCATAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACCAACAAGCATGTGAGCAGGCTTATTTTAAGATGGATAACGCTTTGATTGATGACCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTTTGGTCACAATACAGGCGGAAAGATCAAAAGGATAAAGGTGGTGGTTGCTTCAAGTGTGGTTCTACAGATCATATTGCCAAGGATTGCACTGCAGATGCTCCAATGAGACAGCAACCTGCAAAATACATCTTGAAGGATGATAACTCCCAACGTGGTGAAGATAATGCGAGATATGAAATGGTTTATGATGGAGATAACTCAGAAAGTCCAAGGCGAGATGTAATCAACAGAAGGCATGACAAGGATGACCTGGTTGAGAGAAAAGGTAAGAAGGAAAATTTTGAGCATAGGAGTCATAGAGATCGGGAGACGGGAGGCTCAAACAACAGAGATAGGTATGGTGATAGAGGCAAAGGGCATGGGGGAAATGTAGATGACAAAGCACGATCTGGAAGAGGTGCAAGAGATTTGGATTCCCATTCTGACAAGAAAGACAGGGATAGCCATATGGGAAGACATAGAGATGATGATTACAAGTGGAAAGATGAGCGTGACTCAAGAAGCGACCGTGATAGCTACATAGAAAGGCTAGCTAGTCGTGATGATAGGACAAGAACAGATTCTAGCCGTATGGAGAGAAGGAATGACAGAGATTACAGGAAGAGACCTGAAGATAGTGGACGAAGGAAAAGAAGCCCTGATGATGGGGATTACAAATATAGAAGGGATGATGACGATTACAAACGTAGAAGGGAGGATGAGGATTACAGACATAGAAAGAAAGAGCGTGGACATAGAAGACGAGATGTTGAATCTGATGATTATCCTCATAGGAGGCATCATGGTGAGAGGAGATGA 1773 0.4202 MSVLIVTSLGDLVIDLHTDKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSMTGTVAMASAGENLNASQFYISLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYVLEDPYDDPPQLAEFIPEASPEGKPKNEVDDEVRLEDDWVPMDEQLNPAELQEVIRAKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDDDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDQQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKDKGGGCFKCGSTDHIAKDCTADAPMRQQPAKYILKDDNSQRGEDNARYEMVYDGDNSESPRRDVINRRHDKDDLVERKGKKENFEHRSHRDRETGGSNNRDRYGDRGKGHGGNVDDKARSGRGARDLDSHSDKKDRDSHMGRHRDDDYKWKDERDSRSDRDSYIERLASRDDRTRTDSSRMERRNDRDYRKRPEDSGRRKRSPDDGDYKYRRDDDDYKRRREDEDYRHRKKERGHRRRDVESDDYPHRRHHGERR* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0854 590 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 493 IPR035542 -
Apr5g0854 590 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 160 IPR002130 GO:0000413|GO:0003755
Apr5g0854 590 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Apr5g0854 590 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Apr5g0854 590 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Apr5g0854 590 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Apr5g0854 590 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Apr5g0854 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Apr5g0854 590 CDD cyclophilin_RRM 4 169 IPR035538 -
Apr5g0854 590 SMART rrm1_1 244 317 IPR000504 GO:0003723
Apr5g0854 590 Gene3D - 1 172 IPR029000 -
Apr5g0854 590 Gene3D - 324 377 - -
Apr5g0854 590 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Apr5g0854 590 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Apr5g0854 590 SUPERFAMILY RNA-binding domain, RBD 229 332 IPR035979 GO:0003676
Apr5g0854 590 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Apr5g0854 590 MobiDBLite consensus disorder prediction 386 590 - -
Apr5g0854 590 Gene3D - 180 323 IPR012677 -
Apr5g0854 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Apr5g0854 590 CDD RRM_PPIL4 240 322 - -
Apr5g0854 590 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0854 Apr-Chr5 12497448 12515522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0854 7 166 U-box Gene Family AT5G67530 43.125 4.44e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0854 K12735 - gmx:100776900 923.694