Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0848 ATGCCTGAAGTTGAACAAATGGATTGTGCAGCCGCGAGAAAGACACAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAGGCGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTACACTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTGAGAGAAGAGAAGGCATCTCTAAAATCAGATATCGAGAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATGTTTCAATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCTTATCCGTATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCGTACCCCTTCTTTGCTAGTCAACATCCTGCAATCATCCCTAACCCCTGTTCAACTTTTGTTCCTTATTTAGCCCCCAATACTCTTGTTGAACAGCAATCTACCCAGTTTGTATCCCCACCAATTCATCCAGGTAGTCGATCCCATGTGGCAGGTAAACAGGAGTCCAAAAGCAAATCATCCAGTGAGAGCAAGGCTGAAAAAAATGATGATTCTAATGATGTCACTACAGACCTCGAGTTGAAGACTCCTGGGTCTTCTGCAGATCTGGATTTATCATCCAGACAAAGAAAATCCAGCAAGTTGTCTAGGAAGGAAAGCAGTTGCACAGAAGAGAGTTCGTTAGGTAGGTGCTCTTCATCACGTAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGCGAGCAGGAAGGGTAATGAATGA 867 0.4302 MPEVEQMDCAAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTIQLLKDLTSQVSKLKDEYATLNEESRELTQEKNDLREEKASLKSDIENLNNQYQQQLRTMFQWTAMDHSVMMAPPSYPYPVPMAVPPGPIPMQPYPFFASQHPAIIPNPCSTFVPYLAPNTLVEQQSTQFVSPPIHPGSRSHVAGKQESKSKSSSESKAEKNDDSNDVTTDLELKTPGSSADLDLSSRQRKSSKLSRKESSCTEESSLGRCSSSRSVQDSSSSSVVASRKGNE* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0848 288 PANTHER TRANSCRIPTION FACTOR BHLH121 2 286 - -
Apr5g0848 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 82 IPR036638 GO:0046983
Apr5g0848 288 CDD bHLH_AtILR3_like 17 91 - -
Apr5g0848 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 62 IPR011598 GO:0046983
Apr5g0848 288 Coils Coil 52 114 - -
Apr5g0848 288 SMART finulus 18 68 IPR011598 GO:0046983
Apr5g0848 288 MobiDBLite consensus disorder prediction 1 23 - -
Apr5g0848 288 Gene3D - 10 95 IPR036638 GO:0046983
Apr5g0848 288 MobiDBLite consensus disorder prediction 183 288 - -
Apr5g0848 288 Coils Coil 11 31 - -
Apr5g0848 288 Pfam Helix-loop-helix DNA-binding domain 13 62 IPR011598 GO:0046983
Apr5g0848 288 PANTHER TRANSCRIPTION FACTOR BHLH121 2 286 IPR044579 GO:0003700|GO:0055072
Apr5g0848 288 MobiDBLite consensus disorder prediction 226 241 - -
Apr5g0848 288 MobiDBLite consensus disorder prediction 198 225 - -
Apr5g0848 288 MobiDBLite consensus disorder prediction 242 259 - -
Apr5g0848 288 MobiDBLite consensus disorder prediction 260 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0848 Apr-Chr5 12350301 12360150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0848 3 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 62.500 2.28e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g0848 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0848 - - gmx:100804250 434.876