Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0828 ATGAAGAAGATCAATCTAATACTGAGAAAGTGCAAGAGTTTGTCAAGGCAACTAGGAAGATCTTCATCGTATAGCAGCCTGAGGTCTAAATCAACTAAGGAAGACATTTGGGGTGGACATGGCATGCAAGAAGATGAACATTGTGAAACTATATTTGTTGGAAGCACAAGGAAACGGTATGTGATCAGCTCCAAGTATCTGAACCATCCTCTTCTTAATGCTCTAATCAACAAGTCAAAGCAAAAGGGTTGCGATGAAAATGTGGTGGTCGTCAACTGTGAGGTGGTTCTCTTTGATCATCTATTGTGGATGCTAGAAAATGCAGATCCAAAGTTTAGTTCTGACTCTTTGGAGGAATTGGCTGAACTCTATGTGTTTTAA 381 0.399 MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTKEDIWGGHGMQEDEHCETIFVGSTRKRYVISSKYLNHPLLNALINKSKQKGCDENVVVVNCEVVLFDHLLWMLENADPKFSSDSLEELAELYVF* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0828 126 Pfam Auxin responsive protein 31 105 IPR003676 GO:0009733
Apr5g0828 126 PANTHER EXPRESSED PROTEIN 3 126 - -
Apr5g0828 126 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 126 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0828 Apr-Chr5 11988843 11989223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0828 50 107 Calmodulin-binding Proteins AT5G20810 33.333 2.17e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0828 - - gmx:100500162 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0828 5 11988843 11989223 Apr5g0828 5 11988843 11989223 ECH