Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0822 ATGGGTTTTGATGATTTCAACTATAAGGATGATGAATACATGGAGGATGAAGGTCCTCTTCCAGGGTTTCGTTTCCACCCCACAGATGAAGAACTAGTAGCTTTCTATCTTCGCCGGAAGCTTGACAAGAAACCCACTAGTCTCGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGCGAGTAGTACTGGTGGAGAGAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCGAACAGAGTGACTGGCTCAGGGTTTTGGAAAGCAACTGGGATAGACAAGCCAGTTTACTCACTTGGAGGAGAAGGCAGTGACTGCATAGGACTCAAGAAAACATTAGTTTACTACCGTGGCTGTGCCGGTAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCCTCTTCTAATAGTGACGCCAACACCAACCTTGCCCAAGAAGCTGAAATTTGGACATTGTGTCGAATTTTCAAAAGAAACGTGTCCCAGCGAAAGTACACACCAGATTTGAGACAATTAGGAGCAAAGCGCCTTTCCACTGACAAGATCGCTAGAATGAGAAGTGTGGAGTTCGACACCAATGGTGAAGCGTTTATCAATTTCGGCACAAGCCTTGGCCATTATCACAATGATCATAAGCCCGTGATTAACAGCAACACATTAAGCAACGATCAAAGGCATCATCAGTTTCATGTGGCTGAGTTAAGCTGTCCCGTGGCACAACCACCTCAATTGGCTGCACCTTCTTCGAACTTTTGGATTGAGCCTGTAGCAAACGATTTCTTCACGTTTGAGAATTGGGATGAGCTAGGATCGGTTGTGAAGTATGCTCTTGATTCCCCTCTGATGTAA 900 0.4467 MGFDDFNYKDDEYMEDEGPLPGFRFHPTDEELVAFYLRRKLDKKPTSLELIKQIDIYKYDPWDLPKASSTGGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLGGEGSDCIGLKKTLVYYRGCAGKGTKTDWMMHEFRLPSSNSDANTNLAQEAEIWTLCRIFKRNVSQRKYTPDLRQLGAKRLSTDKIARMRSVEFDTNGEAFINFGTSLGHYHNDHKPVINSNTLSNDQRHHQFHVAELSCPVAQPPQLAAPSSNFWIEPVANDFFTFENWDELGSVVKYALDSPLM* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0822 299 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 9 296 - -
Apr5g0822 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 296 - -
Apr5g0822 299 Gene3D NAC domain 28 179 IPR036093 GO:0003677|GO:0006355
Apr5g0822 299 ProSiteProfiles NAC domain profile. 19 175 IPR003441 GO:0003677|GO:0006355
Apr5g0822 299 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Apr5g0822 299 SUPERFAMILY NAC domain 12 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0822 Apr-Chr5 11831242 11834342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0822 16 184 NAC Transcription Factor Family AT5G39820 57.143 5.36e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr5g0822 NAM 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0822 - - gmx:100790471 436.417