Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0812 ATGGGAAATTCCCATGCTAAAAAGCGTGACCCTAAAATTTCCAGAAACCTTGAAGAGAAAATTCCCTCCCCCTTGTCGTATTCGTTGTCATCAAATTCATCAGAAACTTCATCATCCACATCTTTCAAGATGCATCCTCATAGTTCCGGGAAACTATCCCCCAAACAAAAATATGCTCTGATTCCTGATAACTTCACTACCCTTGACCAGGTTACAACTGCATTGAGGAATGAAGGTTTAGAATCATCCAATCTTGTCCTTGGAATTGATTTCACAAAAAGCAACGAATGGACTGGAAGAATCTCATTCGAAAATAGAAGCCTGCATGCTATTGGAAATACACCTAATCCCTATGAGAAAGCTATCTCTATTATTGGCAAGACTCTGGCTCCCTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCCACCACACATGATCTTGAAGTGTTTAGCTTTCACGGTGATAGTTCATCTTGCCATGGTTTTGAGGAGGTTTTGGCTTGCTATCAAAATATTGTTCCAAATTTGAGACTTTCTGGACCAACCTCTTATGCTCCGGTAATTGAGGCTGCAATAGACATAGTTGAGAAAAGTCATGGACAATTCCATGTGCTAGTTATTGTCGCAGATGGCCAGGTAACAAGTAATGGCGGCACTCAAGATGGAAAACTCAGTCCTCAAGAAGAGAGGACAATCAACGCAATCGTTGAGGCAAGTTCGTATCCCCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGATGACATGAAGAAGTTTGACGACAAGATACCAACACGTGATTTTGACAATTTTCAGTTTGTTAATTTCACTGAAATAATGTCTAAGAATACAAGCTCCTCTGAGAAAGAAACTGCTTTCGCTCTAGCTGCTTTAATGGAGATACCTTTCCAATTTAAAGCAGCCCTTGAACTTGGACTACTTGGTCGTTCAACAGGAAGGTCAAAGAAAATTGTTCCAAGACCTCCTCCAGCTCCTTATTCTCGGTCTGTGCCACCAGCTCATGTTCTGAGCACAATGCCAGCATTCATAGATGATGAGCGAAACCAAATGGTATGTGCGATTTGTCTGACTAATGGAAAGGATTTGGCTTTTGGATGTGGTCACATGACTTGCAGAGACTGTGGATCCAAGATAAGCAATTGTCCCATATGCCGCGAGAGGATCACTACTCGCCTTAGGGTTTTTGCTGGCTGA 1233 0.4193 MGNSHAKKRDPKISRNLEEKIPSPLSYSLSSNSSETSSSTSFKMHPHSSGKLSPKQKYALIPDNFTTLDQVTTALRNEGLESSNLVLGIDFTKSNEWTGRISFENRSLHAIGNTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDLEVFSFHGDSSSCHGFEEVLACYQNIVPNLRLSGPTSYAPVIEAAIDIVEKSHGQFHVLVIVADGQVTSNGGTQDGKLSPQEERTINAIVEASSYPLSIILVGVGDGPWDDMKKFDDKIPTRDFDNFQFVNFTEIMSKNTSSSEKETAFALAALMEIPFQFKAALELGLLGRSTGRSKKIVPRPPPAPYSRSVPPAHVLSTMPAFIDDERNQMVCAICLTNGKDLAFGCGHMTCRDCGSKISNCPICRERITTRLRVFAG* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0812 410 SUPERFAMILY RING/U-box 360 405 - -
Apr5g0812 410 Pfam Zinc finger, C3HC4 type (RING finger) 362 403 - -
Apr5g0812 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 409 IPR013083 -
Apr5g0812 410 SMART VWA_4 82 285 IPR002035 -
Apr5g0812 410 ProSiteProfiles Zinc finger RING-type profile. 365 398 IPR001841 -
Apr5g0812 410 MobiDBLite consensus disorder prediction 1 55 - -
Apr5g0812 410 PANTHER COPINE FAMILY PROTEIN 1 32 408 - -
Apr5g0812 410 Pfam Copine 107 320 IPR010734 -
Apr5g0812 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 32 408 - -
Apr5g0812 410 CDD RING-HC_RGLG_plant 364 408 IPR045317 GO:0061630|GO:0070534
Apr5g0812 410 MobiDBLite consensus disorder prediction 21 47 - -
Apr5g0812 410 SUPERFAMILY vWA-like 83 266 IPR036465 -
Apr5g0812 410 MobiDBLite consensus disorder prediction 1 17 - -
Apr5g0812 410 SMART ring_2 365 397 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0812 Apr-Chr5 11676133 11686040 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0812 K16280 - gmx:100795579 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0812 5 11676133 11686040 Apr5g0812 5 11676133 11686040 ECH