LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0748	ATGGGCCAAGGTGAGCTTATGCCTGGGAACAAGTATAACGGTAACTCAAACCACATTCCGGGTCGTGTAGAGCGGCTTCTGAGAGTGAGAGAATTGAGGAAGAGTAGCAGGGCATGCCATTTGAATGAGTTAGGGGAGAATAATAGCAATAGGATTGGGGTTGGTGCAGAGGGTGGTTGTGAGGAGCAGGTGCGGTTGAGAGAAGAGGAGAAATTGGGTGAAGTGGTTGGTGAAGGGGTTGGAGAAGGGTGTGAGAGGGAAGATGGGAAGGGTTTTAGACAGAGGCTATTGGTTGTGGCTAATAGGTTGCCTGTGTCGGCAGTTAGAAAAGGCGAGGATTCATGGTCTTTGGAGATAAGTGCCGGTGGCCTCGTCAGCGCTCTGTTAGGTGTGAAGGAGTTTGAGGCAAGATGGATAGGATGGGCCGGTGTCAACGTGCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCCTTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTGATGAGGAGATTGTTCATCAATATTATAATGGCTATTGCAACAACATCTTATGGCCCCTATTCCATTACCTTGGCCTACCACAAGAAGACCGCCTTGCCACCACACGTAGTTTCCAGTCTCAGTTTGAGGCATACGAGAAAGCAAATCAAATGTTTGCTGATGTTGTGAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCCAAATGTTTAAAGAATCATAACAAAAAAATGAAAGTTGGGTGGTTTCTCCACACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATTCTGTTCTTGCTGCTGATTTAGTTGGTTTTCACACTTACGATTATGCAAGACATTTTGTTAGTGCTTGTACTCGAATACTTGGACTTGAGGGTACTCCTTATGGGGTTGAGTATCAAGGGAAGCTCACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCAGAACGATTTATACGTGCTCTTGACCTTCCTCCGGTACAAGATCACATCAAAGAGTTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTGGACATGATTAAAGGAATCCCTCAGAAAATTCTAGCATTTGAGAAATTTTTGGAAGAAAATGCTTATTGGCGTGATAAAGTCGTTCTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCAGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTCGGTCGCATCAATGGCAGATTTGGATCATTGACTACTGTTCCTATACATCACCTGGATCGCTCACTTGACTTTCATGCCCTATGTGCTTTGTATGCTGTTACTGATGTAGCACTAGTAACCTCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAAGAGGAAAAGAAAGGAGTTCTCATTCTTAGTGAATTTGCCGGTGCAGCACAGTCTCTTGGTGCTGGAGCAATTCTTGTTAACCCTTGGAACATTACAGAAGTTGCTGCTGCAATTGCTAGAGCTCTGAATATGCCATCTGCAGAAAGAGAAAAGAGACATAAACATAATTTTCTTCACGTTAAATCACACACTGCTCAAGAATGGGCAGGAACTTTTGTGAGTGAACTAAATGATACTGTTATCGAGGCACAACTAAGGACAAGAGAAGGTCCACCCCGGCTTACAACTGAGACTGCAATTGAACATTATCTGCAGTCGACTAATCGATTGCTCATTTTGGGATTCAGTGGAACTTTAACTGAACCAGTTGAGAAAACAGGTGATCAGATTAAAGAAATGGAGCTTAAGAACTTCAAAGAATATGACATGTGGTTGGCAGCAGAGAATGGAATGTTTTTACTTCCTTCAAAGGGTGAATGGATGACAACAATGCCAGAGCATCTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAAAGAACACCTCGGTCACATTTTGATTTTGAAGAAAGGGAAACTTCGCTTGTATGGAATTACAAATATGCAGATGTTGAATTTGGGAGACTTCAAGCAAGGGACATGCTGCAGCATCTGTGGACAGGTCCAATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACAAAGGGAGCAGCTATTGACCGCATTTTGGGTGAGATAGTGCACAGTAAATCCATGACGTCACCAATAGATTATGTTCTTTGCATTGGACATTTCCTGGGGAAGGATGAAGATATTTATTCATTTTTTGAGCCAGATCTTCCTTCTATTGGGGTGGGTCTTCCACGAAGTAAGGTAACAACGGAAGGGGTCAAGTTTCCGGTTGAGAAGAAACAATGTATGAAGATCCCACCCAGCAAAAGTGGATCAAAGCCATCTCAAAATAAGGCACAACGTCAAGTTTCAAATTCTGATAAGAAAACAAATAATAACTATGTCTTCAGTGCATCTCGCAAGCCATCTCCTGAAAAGGCATCATCATGGAACGTTCTTGACCTTAAGAAAGAGAACTACTTCTCATGTGCTGTTGGACGAACCCGAACAAATGCTCGCTACACGCTCGATTCTTCAGACGACGTCGTTTCATTTCTCAAGAAACTAGCAGATGCTTCTTTACCGCAGCGTTAA	2706	0.4313	MGQGELMPGNKYNGNSNHIPGRVERLLRVRELRKSSRACHLNELGENNSNRIGVGAEGGCEEQVRLREEEKLGEVVGEGVGEGCEREDGKGFRQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKNHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPPVQDHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEEKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIARALNMPSAEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTREGPPRLTTETAIEHYLQSTNRLLILGFSGTLTEPVEKTGDQIKEMELKNFKEYDMWLAAENGMFLLPSKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFDFEERETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPRSKVTTEGVKFPVEKKQCMKIPPSKSGSKPSQNKAQRQVSNSDKKTNNNYVFSASRKPSPEKASSWNVLDLKKENYFSCAVGRTRTNARYTLDSSDDVVSFLKKLADASLPQR*	902

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0748	901	Pfam	Trehalose-phosphatase	610	784	IPR003337	GO:0003824\|GO:0005992
	Apr5g0748	901	SUPERFAMILY	HAD-like	592	894	IPR036412	-
	Apr5g0748	901	Gene3D	-	649	731	-	-
	Apr5g0748	901	MobiDBLite	consensus disorder prediction	812	850	-	-
	Apr5g0748	901	CDD	GT20_TPS	95	560	IPR001830	GO:0003824\|GO:0005992
	Apr5g0748	901	Gene3D	Glycogen Phosphorylase B;	87	341	-	-
	Apr5g0748	901	Gene3D	-	617	786	IPR023214	-
	Apr5g0748	901	Pfam	Glycosyltransferase family 20	95	560	IPR001830	GO:0003824\|GO:0005992
	Apr5g0748	901	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	45	618	-	-
	Apr5g0748	901	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	619	894	-	-

Showing 1 to 10 of 16 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0748	Apr-Chr5	10399021	10420319	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g0748	7	897	Trehalose Biosynthesis Gene Families	AT1G78580	74.737	0.0	1393

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0748	K16055		-	gmx:100797320	1551.57

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr2g0500	2	5793141	5812789	Apr5g0748	5	10399021	10420319	ECH
	Apr5g0748	5	10399021	10420319	Apr5g0748	5	10399021	10420319	ECH

Showing 1 to 2 of 2 entries