Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0744 ATGGAGTCCACCACATTCCTCAACGATCTACCACCTCACAAGAGACTCAGACTCATTCAACAACAACAACAGCAACAAGAAAACAGTGCTTCTTCTCCCTTACCAGCCAAAAAACGCAGAGAATCACGAAACCCACCATCACCCGTTCATCCCTCTCCCACCATTTACTCACTCCCCGCCAAAAAGAGAGTATGCGCACTCCACCCCCAAAACGACGCCGTTCCCCCCTTCGACCTCAACGTCGAATACAACCCATCCCCCCACGAAAAAGCCCAGGCCCACTCCCCGGCCCAACAAGAAGAAAACACCGACGACGACGGGATCTTATGCTGCGTGTGCCAAAGCACCGACGGTGACCCTTCTGACCCAATCGTCTTCTGCGACGGGTGCGACCTCATGGTACACGCTTCCTGCTACGGTAACCCCTTGTCCAAGGGAATCCCCGAGGGTGACTGGTTCTGCGAACGCTGTCGTTTCATCCAGAGAGAGAAAAGTAAGGGTAATACCAACAGCAATGATAATAATAACAACGTTGTTTGTTGTGCTCTGTGTCCGGTGAAGGAGGGTGCCATGAAGCGCACGACGGACGCGCGTTGGGCGCACGTGGTATGTGCGGTGTTGGTGCCGGAGGTGTTTTTCTGGGACCCGGAAGGGAGAGAGAGGATAGATTGCTCTAAGGTTCCTAAGAAGAGGTGGTTGGAGAAGTGCTACGTTTGTGGGTGTTGTGATGGGTGTGCTTTGGTGTGCTCTGAGCCTAAGTGTGGTTTGGCTTTTCATGCTACTTGTGGTCTTAAGGAGGAGCTTTGCATTGAGTACAAGGTAGGGAAGAATGGTGCTACCATCGTTGCCGGTTTCTGCAAAACCCATTCTCAACTGTGGGAAAAGCAACAGCAATCTGGGAAGTACAAAATTGTTGCCTCTGAAGATAAAAAGTGTAGAAGTGGTAGTTAG 951 0.5142 MESTTFLNDLPPHKRLRLIQQQQQQQENSASSPLPAKKRRESRNPPSPVHPSPTIYSLPAKKRVCALHPQNDAVPPFDLNVEYNPSPHEKAQAHSPAQQEENTDDDGILCCVCQSTDGDPSDPIVFCDGCDLMVHASCYGNPLSKGIPEGDWFCERCRFIQREKSKGNTNSNDNNNNVVCCALCPVKEGAMKRTTDARWAHVVCAVLVPEVFFWDPEGRERIDCSKVPKKRWLEKCYVCGCCDGCALVCSEPKCGLAFHATCGLKEELCIEYKVGKNGATIVAGFCKTHSQLWEKQQQSGKYKIVASEDKKCRSGS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0744 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 292 IPR013083 -
Apr5g0744 316 MobiDBLite consensus disorder prediction 76 102 - -
Apr5g0744 316 Pfam PHD-zinc-finger like domain 181 289 - -
Apr5g0744 316 ProSiteProfiles Zinc finger PHD-type profile. 107 160 IPR019787 -
Apr5g0744 316 ProSitePatterns Zinc finger PHD-type signature. 110 157 IPR019786 -
Apr5g0744 316 CDD PHD_BRPF_JADE_like 109 157 - -
Apr5g0744 316 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 101 309 - -
Apr5g0744 316 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 97 - -
Apr5g0744 316 MobiDBLite consensus disorder prediction 1 56 - -
Apr5g0744 316 ProSiteProfiles Extended PHD (ePHD) domain profile. 178 290 IPR034732 -
Apr5g0744 316 PANTHER PHD FINGER PROTEINS 6 97 - -
Apr5g0744 316 PANTHER PHD FINGER PROTEINS 101 309 - -
Apr5g0744 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 170 IPR013083 -
Apr5g0744 316 SUPERFAMILY FYVE/PHD zinc finger 100 163 IPR011011 -
Apr5g0744 316 MobiDBLite consensus disorder prediction 17 33 - -
Apr5g0744 316 Pfam PHD-finger 110 158 IPR019787 -
Apr5g0744 316 SMART PHD_3 109 158 IPR001965 -
Apr5g0744 316 SMART PHD_3 235 290 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0744 Apr-Chr5 10325300 10327150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0744 20 311 C2H2 Transcription Factor Family AT3G14740 49.544 1.11e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr5g0744 zf-HC5HC2H_2 1.1e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0744 K11380 - gmx:100802652 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0744 5 10325300 10327150 Apr5g0744 5 10325300 10327150 ECH