Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0742 ATGACTTGTTTTACTTTCTTATTTGGTGGTAAGAAAGTGTCTTCTTCAAAACAAGATCCAGATATCGATGAAGAACTCTCAGGCATTCGAAATGTAAGAATCTATACCTACAAAGAACTAAAAGTTGGCTCTGACAATTTCAGTCCAGCCAATAAAATTGGAGAGGGAGGTTTTGGTTCGGTTTATAAGGGACTGTTAAAAGATGGAAAAGTAGTTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAATTCATGACAGAGATTAATGTGATATCTGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGAAATCACCGAATTTTAGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGGTTCAGGTCACTGTAATATCAACTTTGATTGGAAAACACGATCTAGGATATGCATTGGGGTTGCATGTGGGCTGGCCTTTCTTCATGAGGAAGTGAGGCCACATATTGTTCACAGGGATATAAAAGCTAGCAATATTCTTCTTGACGAAAGCCTTACACCCAAGATTTCTGATTTTGGCCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGTCAGCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTCCTTCTTATGGAGATAGTTAGCGGAAGATGCCATACAAATGCACGATTACCGATAGGAGAGCAATATATTTTAGAAACGGCGTGGGAACTTTATCAGCGAAGGGAATTGGTGGGGCTTGTAGACACATCACTAAACGGGGATTTTGATGCAGAGGAGGCTTGTAAATTTTTGAAGATTGGACTTCTTTGTGCTCAGGATACACCGAAGCTCCGGCCAACCATGTCTGCTGTGGTCAAGATGCTCACTGGAGAAATGGACATTGATGAAATTAAGATAACAAAACCAGGCCTGATTTCAGATTTGATGGACCTTAAAATCAGAGAACAAAAAGGTAATATTGGTATGAAGGCTTCATCTTCATACAATACTTCCTCTGCCTCAGACAGCCAGGGGACTACCACGTCATTAGCTGCTTCAAGCGTTGAAACTACAACCTTCACAATAAAGCACAATGAAACCGTGTAA 1176 0.4022 MTCFTFLFGGKKVSSSKQDPDIDEELSGIRNVRIYTYKELKVGSDNFSPANKIGEGGFGSVYKGLLKDGKVVAIKVLSAESRQGVKEFMTEINVISEIEHENLVKLYGCCVEGNHRILVYNYLENNSLAQTLLGSGHCNINFDWKTRSRICIGVACGLAFLHEEVRPHIVHRDIKASNILLDESLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLMEIVSGRCHTNARLPIGEQYILETAWELYQRRELVGLVDTSLNGDFDAEEACKFLKIGLLCAQDTPKLRPTMSAVVKMLTGEMDIDEIKITKPGLISDLMDLKIREQKGNIGMKASSSYNTSSASDSQGTTTSLAASSVETTTFTIKHNETV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0742 391 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 373 - -
Apr5g0742 391 CDD STKc_IRAK 53 320 - -
Apr5g0742 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Apr5g0742 391 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Apr5g0742 391 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Apr5g0742 391 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0742 391 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0742 391 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Apr5g0742 391 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Apr5g0742 391 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 2 373 - -
Apr5g0742 391 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0742 Apr-Chr5 10303744 10308344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0742 4 370 Receptor kinase-like Gene Family AT1G53430 50.543 2.55e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr5g0742 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0742 - - gmx:100800503 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0742 5 10303744 10308344 Apr5g0742 5 10303744 10308344 ECH