Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0715 ATGATTTGTTCCATGGCTTCCACAGCAGCTCCGCGGGTTGTGTTATACAGTGCTGTGATATTAGGAAATCAGCCTAAGGCTTTGAGAGGAAAGGGTTTGAGGGGAGAAACCAGAAACACCCGTTACAGCACTTTGCAGGTTCAAGCCTCGAGCACGCGCAGACCCCAGAGAGCACCCCCTGGAGTTGACACAAGAATCCATTGGGACAATGAAGATGAAGGTTGGATTGGAGGTAACGATACTCAACACCAACAAAACAGCGCCAATAACCTGTTGGGTGAAAACTTTGCTGATTTGCTCGCCACTTCTTCAGGTTCTCATTACGAATTCTTAGGAGTATCACCAGATGCAGATTTAGAAGAAATTAAAGTTGCTTATCGGAGACTATCAAAGGAGTACCATCCAGACACTACTTCTCTTCCTCTCAAAACTGCTTCAGAAAAATTCATGAAATTGAGAGAGATTTATAACCTTCTTAGCAACGATGAGAGTCGAAGATTTTATGATTGGACCCTCGCTCAAGAGGCTGCTAGCCGCCAAGCAGAGAAGACGAGAATGAAGTTAGAGGATCCCTATGAGCAAGAAGTGAAGAACTGGGAATCTGTTCCAGACATGGTTGACCGCCTTGGTGGAAGGAACATGGACCTTAGTGATCAAGCAGTTTCTGCCCTCACTATTGATGTTTTTATCATTATTTTTGCCATATGTTGCATCATATACGTAGTTTTCTTTAAAGAACCTTACTATTAG 750 0.436 MICSMASTAAPRVVLYSAVILGNQPKALRGKGLRGETRNTRYSTLQVQASSTRRPQRAPPGVDTRIHWDNEDEGWIGGNDTQHQQNSANNLLGENFADLLATSSGSHYEFLGVSPDADLEEIKVAYRRLSKEYHPDTTSLPLKTASEKFMKLREIYNLLSNDESRRFYDWTLAQEAASRQAEKTRMKLEDPYEQEVKNWESVPDMVDRLGGRNMDLSDQAVSALTIDVFIIIFAICCIIYVVFFKEPYY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0715 249 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 31 248 IPR044618 -
Apr5g0715 249 Gene3D DnaJ domain 97 193 IPR036869 -
Apr5g0715 249 SMART dnaj_3 105 164 IPR001623 -
Apr5g0715 249 MobiDBLite consensus disorder prediction 37 57 - -
Apr5g0715 249 MobiDBLite consensus disorder prediction 30 63 - -
Apr5g0715 249 ProSiteProfiles dnaJ domain profile. 106 172 IPR001623 -
Apr5g0715 249 Pfam DnaJ domain 107 169 IPR001623 -
Apr5g0715 249 SUPERFAMILY Chaperone J-domain 105 174 IPR036869 -
Apr5g0715 249 ProSitePatterns Nt-dnaJ domain signature. 149 168 IPR018253 -
Apr5g0715 249 PRINTS DnaJ domain signature 108 126 IPR001623 -
Apr5g0715 249 PRINTS DnaJ domain signature 126 141 IPR001623 -
Apr5g0715 249 PRINTS DnaJ domain signature 144 164 IPR001623 -
Apr5g0715 249 CDD DnaJ 107 161 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0715 Apr-Chr5 9748176 9749248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0715 100 174 C2H2 Transcription Factor Family AT1G74250 36.145 1.88e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0715 K23051 - gmx:100819309 330.487