Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0711 ATGACGATGCAGCTTCCGTGCGATAGCGAAGGCGTGTGCATGGTATGCAAGGGTAAGCCAGGGGAGGAAGAGACGCTTGTATGCATCACATGCCACACCCCATGGCACGCCCGCTGTCTCTCCGCCCCTCCATCCACCCTCGCCGCCACCAATCACTGGCTCTGCCCCGATTGTTCTGACCCTCACCTGGATTTCCCCCCAGCACACGCCCCCGCCCCCAGCCACCTCGTCGCTGCAATGCTAGCCGTCGAGAACGATCCTTCTCTCACCCAACGCCAGAAAGCCAGAAAACGCCAACACCTCATCACCGGAAAGGTCCACCCAGACGACGACGACGACGACGACAAAGAGAAACAGAATAAGTCGTCAGTATCCGATGTTCTTGCTCGATCTCTCAACTGCTCCATCTGCATCCACCTACCGGAGAGGCCCGTCACGACTCCGTGTGGACACAGTTTCTGTCTGAAGTGCTTTGAGAAATGGATTGGGCAGGGAAAGAGAAGTTGCGCAAAGTGCCGCCAGATTATCCCCCCCAAAATGGCAAGCCAGCCCCGTATCAATTCAGCACTGGTTTTCGCCATTCGCATGGCCAGAGCAGGAGCAGCAGGAGGAGCAGCAGGACTGGCTTCAAACACCGTTAAGCATTTCCTCCACAACCAGGACAGACCTGACCAGCCATATACTACGGAGCGCGCCCAGAGGAACGGTCGTGCAAATGCCGCCAGCGGTAAGATATTCGTGACGGTGCCCACCGATCATTTTGGTCCAATCACGGCGGAGAATGACCCTTTGCGGAATCAGGGTGTCCTGGTCGGTGAATGTTGGAATGATAGGTTGGAGTGCAGGCAATGGGGTGCTCACTTCGTCCCTATCGGTGGTATTGCCGGCCAGTCCCATCGCGGTGCCCAATCTGTTGTTCTCTCCGGTGGTTATGTCGACGACCAGGATCACGGCGAATGGTTTCTCTACACCGGAAGCGGTGGTAAGGATCTCAGTGGCAACAAGCGCACCAACAAAAATCACTCTTTTGACCAGCAGTTTGACAAGTACAACCGTGCTCTCCAAGTTAGTTGTCTCAAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAACGATCCTCCTATGCCCCTGAGAGAGGAGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCGGGACTGCAGGGTTTCAAAATTTGCCGCTACCTATTCGTTAGGTGTGACAATGAACCTGCCCCTTGGACAAGTGATGATCATGGGGATAGGCCCAGACCCTTGCCACTCATTCGGGAACTCAAAAAGGCTACAGTCATATTTGAAAGGACCGAAACTCCATCTTGGGATTTCGATGAGGAAGATTCTCGTTGGAAGTGGAAGAAATCACCACCTCCCAGCAGACAAAAGGTACAAAACGAGGAACCCATTGTGGCAGCAGCGTCAAAGTCAAACAGAGAAAAAATGGAATTCCAAATAAAGTCAATCAAGGAACAATTGCAGAGAGGGTTCTCGTGCATGATATGCAGGGAGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTTTGCAAGTCGTGTTTGGAAGGTGCTTTTGCTGGTCAGGCTTTTGTGAAGGAGAGAAGCAGGGGTGGGAGAACGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCTGCTTGCACCATTGACATCTCTGATTATCTTCAGAACCTTCAGGTTGATATAGATTTGAAGGGTGCGATTGAATCACTGAAAGCGGAGGCTGAAGAAATTGGAGAATCGCTGGAGTCGAGTGAGGATGCAGATAGATCACAGGACGATGGAGGTGACAAGGATGAAGGTCCTGACCCAGTGAACAAAAATTCTGTAGAGGTGTTGAACGGTTCACCAGTAGGACCTGATGTTAGTGAGGTTAAAGATACCAAAAAGGAGGCAAATCCAGCGGTGAAGCGCAATGCAAAGAGAATGAAAAGTAATTATGGAAAACAATCGCCTGAAATGGGTGATGGTAAAATTGCCGAAGGAAGTAAAAAATACAGAAAGACTAAGGCTTAG 2073 0.5075 MTMQLPCDSEGVCMVCKGKPGEEETLVCITCHTPWHARCLSAPPSTLAATNHWLCPDCSDPHLDFPPAHAPAPSHLVAAMLAVENDPSLTQRQKARKRQHLITGKVHPDDDDDDDKEKQNKSSVSDVLARSLNCSICIHLPERPVTTPCGHSFCLKCFEKWIGQGKRSCAKCRQIIPPKMASQPRINSALVFAIRMARAGAAGGAAGLASNTVKHFLHNQDRPDQPYTTERAQRNGRANAASGKIFVTVPTDHFGPITAENDPLRNQGVLVGECWNDRLECRQWGAHFVPIGGIAGQSHRGAQSVVLSGGYVDDQDHGEWFLYTGSGGKDLSGNKRTNKNHSFDQQFDKYNRALQVSCLKGYPVRVVRSHKEKRSSYAPERGVRYDGIYRIEKCWQIAGLQGFKICRYLFVRCDNEPAPWTSDDHGDRPRPLPLIRELKKATVIFERTETPSWDFDEEDSRWKWKKSPPPSRQKVQNEEPIVAAASKSNREKMEFQIKSIKEQLQRGFSCMICREVMVSPVTTPCAHNFCKSCLEGAFAGQAFVKERSRGGRTLRSQKNVMKCPACTIDISDYLQNLQVDIDLKGAIESLKAEAEEIGESLESSEDADRSQDDGGDKDEGPDPVNKNSVEVLNGSPVGPDVSEVKDTKKEANPAVKRNAKRMKSNYGKQSPEMGDGKIAEGSKKYRKTKA* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0711 690 MobiDBLite consensus disorder prediction 595 690 - -
Apr5g0711 690 Gene3D - 235 434 IPR036987 -
Apr5g0711 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 612 IPR013083 -
Apr5g0711 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 197 IPR013083 -
Apr5g0711 690 CDD RING-HC 134 172 - -
Apr5g0711 690 Pfam RING-type zinc-finger 510 564 IPR027370 -
Apr5g0711 690 SUPERFAMILY RING/U-box 127 180 - -
Apr5g0711 690 ProSiteProfiles Zinc finger RING-type profile. 510 567 IPR001841 -
Apr5g0711 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 60 IPR013083 -
Apr5g0711 690 ProSiteProfiles Zinc finger PHD-type profile. 10 61 IPR019787 -
Apr5g0711 690 SUPERFAMILY RING/U-box 502 592 - -
Apr5g0711 690 Pfam SAD/SRA domain 267 415 IPR003105 -
Apr5g0711 690 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 3 614 - -
Apr5g0711 690 MobiDBLite consensus disorder prediction 102 123 - -
Apr5g0711 690 ProSiteProfiles YDG domain profile. 264 412 IPR003105 -
Apr5g0711 690 MobiDBLite consensus disorder prediction 595 624 - -
Apr5g0711 690 SUPERFAMILY FYVE/PHD zinc finger 4 63 IPR011011 -
Apr5g0711 690 MobiDBLite consensus disorder prediction 458 478 - -
Apr5g0711 690 SUPERFAMILY PUA domain-like 238 436 IPR015947 -
Apr5g0711 690 SMART PHD_3 12 59 IPR001965 -
Apr5g0711 690 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Apr5g0711 690 Pfam Zinc finger, C3HC4 type (RING finger) 134 172 IPR018957 GO:0046872
Apr5g0711 690 MobiDBLite consensus disorder prediction 88 124 - -
Apr5g0711 690 MobiDBLite consensus disorder prediction 642 657 - -
Apr5g0711 690 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 614 IPR045134 -
Apr5g0711 690 SMART G9a_1 259 416 IPR003105 -
Apr5g0711 690 SMART ring_2 13 58 IPR001841 -
Apr5g0711 690 SMART ring_2 510 566 IPR001841 -
Apr5g0711 690 SMART ring_2 134 172 IPR001841 -
Apr5g0711 690 ProSiteProfiles Zinc finger RING-type profile. 134 173 IPR001841 -
Apr5g0711 690 ProSitePatterns Zinc finger RING-type signature. 525 534 IPR017907 -
Apr5g0711 690 Coils Coil 587 607 - -
Apr5g0711 690 Pfam PHD-finger 12 59 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0711 Apr-Chr5 9693471 9696783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0711 1 601 C2H2 Transcription Factor Family AT5G39550 57.680 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr5g0711 SAD_SRA 1.6e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0711 K10638 - gmx:100801535 1116.68