Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0707 ATGCAACCCACTTCCGCGGGCGGCGGCCTATCCCGCTTCCGCTCAACTCCGGCGAGCTGGTTAGAAGCTGTTCTTCTTAAGGAGGGGGAAGAGGAAAGCGAATGCGAAGCCGAAGCCCAAGACCCCTTAAGCTTTACTCAACTCCTCTCCACTAACACTGCTCCCTCTACCCTCTTTGCCTCCCAACACCAACGCTTCGTCGATTACCCTCTTTCCGCTCCAGCTAATCCAATCGCACACCAGGAAATTGAAGGTAGTGGTAAGGCACCTGACACTGACGTGAAAATGGACAAGATTTTAGAGGATTCGGTACCTTGTAGAGTTCGGGCAAAGCGTGGATGTGCTACGCATCCAAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGTATAAGTGACCGCATAAGAAAGCTCCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCCGATATGTTAGACGAGGCGGTAGCTTATGTCAAGTTTCTACAACAGCAAATTGAGGAACTATCAGAGGACCAGCGGAGGTGTAAGTGCATGGTTCAAGAGTAA 555 0.5009 MQPTSAGGGLSRFRSTPASWLEAVLLKEGEEESECEAEAQDPLSFTQLLSTNTAPSTLFASQHQRFVDYPLSAPANPIAHQEIEGSGKAPDTDVKMDKILEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQQQIEELSEDQRRCKCMVQE* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0707 184 Gene3D - 115 184 IPR036638 GO:0046983
Apr5g0707 184 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 89 178 - -
Apr5g0707 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 164 IPR011598 GO:0046983
Apr5g0707 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 182 IPR036638 GO:0046983
Apr5g0707 184 Coils Coil 154 181 - -
Apr5g0707 184 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 178 - -
Apr5g0707 184 SMART finulus 120 170 IPR011598 GO:0046983
Apr5g0707 184 CDD bHLH_AtbHLH_like 119 172 IPR045239 -
Apr5g0707 184 Pfam Helix-loop-helix DNA-binding domain 119 165 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0707 Apr-Chr5 9654292 9657584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0707 8 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 51.099 7.99e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g0707 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0707 - - aprc:113865701 338.191