Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0691 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTGTTTGTTGGTGGCTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACCGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGCAGGGAGGAATTTTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCGGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATAGTGTATATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGCGGACCAGGAGGGATGATGACGGGAGCCGCAGCGTTCTACCCTTATCTGCAGTACGGTGAAGGGAGTGGCGGCGGCACTACCGGCGGCTACACTTCCGGTCAGGGTTATAGTGTGAACTACCCACCTCAGCTCTTTCAGTATTCCCCCATTGCCTCAACTGGTGGCTACGCCCAGCACTATGGAACACCCATGTCCCTTGCCCCTTCCCCTGCCTTGCAATCAGGCGTGACGATGGCTCTTCAAGCTCCAATTCCTCATCGCTAG 807 0.5081 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGAGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGEGSGGGTTGGYTSGQGYSVNYPPQLFQYSPIASTGGYAQHYGTPMSLAPSPALQSGVTMALQAPIPHR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0691 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Apr5g0691 268 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Apr5g0691 268 Gene3D - 7 112 IPR012677 -
Apr5g0691 268 SMART rrm1_1 17 89 IPR000504 GO:0003723
Apr5g0691 268 PANTHER OS01G0876800 PROTEIN 1 263 - -
Apr5g0691 268 CDD RRM_RBM24_RBM38_like 16 91 - -
Apr5g0691 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Apr5g0691 268 PANTHER BOULE-RELATED 1 263 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0691 Apr-Chr5 9436195 9441850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0691 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 4.92e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0691 - - adu:107477578 458.373