Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0684 ATGGTGGTCAACGAGAGACCCGCCAAGAGGATGAAGAGGAGAGTCACAGCTGATCTCTATGATTTTCTCACTTTCCCCGTCGCTGGTGACGCCTCCTCCGACGGACCTTTCCGGAACTCCGTTCAGCGCTTCCTCTCCGACCACGCGCGCATCACTTTCCCTCCTTCGCTCTTTCCATCCTTCATGACGTGGCAGATCTTGTTCCGTGTTGGAGACATCGTCCACGGGCCCGATCTCTCGCCGGCGATGGTCACTCTTGACATTGTCGAGGAGGACGTAACTCGTTCTCGTACTTCTGTTTACTGCGACCAGTGCCGAGTCGTTGGATGGAGTTCACATCCTGTGTGTCGAAAGCGGTACCATTTCATAATAAGGGCTGCAAGTAACGCTATCGAAGCATATCAAAGACCTTGTTCACGATGTGGAAATCTCCTCCAATTATCTGAAACAAGGTGTAGATCGTGTAACTTTGTTATCACCGTGGATGACCTTGAGGATTGGGTGTATCTTCAAATAGAAGATAACACCCATCTTCTGCATGGTGTTGTCCACGCCAATGGTTACGGACACCTGCTTACCCTTAATGGAAGAGAAGGTGGCTCGAAGCTTCTCTCAGGATCTGTTATCATGGGTTTCTGGGATAGGCTATGTGCTGCGATTTCTGTTAGGAAGGTTAGCGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATATCGGTTGCTTCATGCAGTCACCAACGGACATTCGTGGTATGGCAATTGGGGTTATGAATTTGGAACAGGCAGCTATGCCCTTACCCAAGATGCGTACAAGGAAGCAGTGAATACCCTGTCGAGCATGCCCTTGTCTTCATTTTCATTCCATGGACGGGGACCACGAAGCCGCTTGCAGTGTGTCATTTCTCTTTATCAGTCTTTGGCAGATACTGAACTTCTAACAATTGAAGATCTGTTCGGCTTTTTGTTGACGTTGGTTTACGAATGTCGTAAGCCCACGACCACTCCCACAGGTACTTCTAAACAGCATGAATACAGCAGCACCACTTTATTGTGTGCTTGGACGGGAAAGGAAGTTGAAGATGTGCAGCAGGCTTTGATCAAGGTATTGCTTGCATCTGATGCCCGCGATGAGGCCAAATGGGTTACAAGGCGTGCCCTCAAGGGTGCGGTGTGCAGGAGTGTTGCATCTCCAGAGCTTCTGGACTACTGTCTTAAGAACTTGCAAGGAAAATCCGCTGCCGATGGAATGGTAGTTTGTTCACGATGCAATCCCATTTCCAGTGCAATCGAATTCAGGTTGGGACCGTCGACTAATGGAGTTCGTGCAAATTCATGTTATCCATCAGAAGAGCAAGTGGTCTCCGATTTGAAATTCTTATTTGATTCAATTATTCACCCCGACAAAATGTTGAGCTACAGACCTAGGGTTATGAGGAAAAGGGTGGCTAATTCGGCCAGGAAGCTCCTTGACTGTAAGCAGTTTATGAAGGATTACAAGCCAGATGAAGTAGCCGTAGAACAGCCATCAGTCATTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAAGATGATCCATCCCCACCGCCAGAGCTGATTGTGTTGCCTTTGAATGCCACCGTTGCTGACCTCAAGAGCGAAGTCACTAGTGCTTTTCAAGAGGTATATGCAATGTATAAAAGGTTTCAAGCTGAGGAACTCCTGGGTTATGGGTCAATCAGTGATTCGCTCACCGTCAAGTTTCTGCTTGGAACTAGTGGATCAATCCAAATTCAAGGTAAATGCCCAGCCAAAAATGGGCTAAGCCGGTTCCGAATGGAACGAGGAACAGAGGCATGGAAGGTTGATTGCACTTGCGGGGCTAAGGATGATGATGGAGAAAAAATGTTAGCGTGTGATACTTGCGGCATTTGGCAGCATACCAGATGCGCTGGAATTAAGAATTCTGATGGCATGCCTTCGAAGTTTGTGTGTGAGAGATGCGTCCACTCTTACCGTGAGGAGACCAAAAAACTGCCAGACTCTGGTGACGAGGCTTACAAGACTTGTAATTTGAACACATCTTGCAGGGATGAAGCAGTGGCAACGGACTGTGCAAGTGCAGCAGTTGCTTGTAACATATCTGTGAATTTTGGTGTACGTTGA 2148 0.4781 MVVNERPAKRMKRRVTADLYDFLTFPVAGDASSDGPFRNSVQRFLSDHARITFPPSLFPSFMTWQILFRVGDIVHGPDLSPAMVTLDIVEEDVTRSRTSVYCDQCRVVGWSSHPVCRKRYHFIIRAASNAIEAYQRPCSRCGNLLQLSETRCRSCNFVITVDDLEDWVYLQIEDNTHLLHGVVHANGYGHLLTLNGREGGSKLLSGSVIMGFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAVTNGHSWYGNWGYEFGTGSYALTQDAYKEAVNTLSSMPLSSFSFHGRGPRSRLQCVISLYQSLADTELLTIEDLFGFLLTLVYECRKPTTTPTGTSKQHEYSSTTLLCAWTGKEVEDVQQALIKVLLASDARDEAKWVTRRALKGAVCRSVASPELLDYCLKNLQGKSAADGMVVCSRCNPISSAIEFRLGPSTNGVRANSCYPSEEQVVSDLKFLFDSIIHPDKMLSYRPRVMRKRVANSARKLLDCKQFMKDYKPDEVAVEQPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVADLKSEVTSAFQEVYAMYKRFQAEELLGYGSISDSLTVKFLLGTSGSIQIQGKCPAKNGLSRFRMERGTEAWKVDCTCGAKDDDGEKMLACDTCGIWQHTRCAGIKNSDGMPSKFVCERCVHSYREETKKLPDSGDEAYKTCNLNTSCRDEAVATDCASAAVACNISVNFGVR* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0684 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 669 IPR013083 -
Apr5g0684 715 SMART PHD_3 617 663 IPR001965 -
Apr5g0684 715 ProSitePatterns Zinc finger PHD-type signature. 618 662 IPR019786 -
Apr5g0684 715 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 686 - -
Apr5g0684 715 ProSitePatterns Uncharacterized protein family UPF0054 signature. 180 190 IPR020549 -
Apr5g0684 715 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 686 - -
Apr5g0684 715 Pfam PHD-finger 618 664 IPR019787 -
Apr5g0684 715 CDD PHD_MMD1_like 617 662 - -
Apr5g0684 715 SUPERFAMILY FYVE/PHD zinc finger 607 665 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0684 Apr-Chr5 9312231 9315440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0684 7 662 PHD Transcription Factor Family AT5G22260 27.826 5.50e-88 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr5g0684 PHD 3.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0684 - - gmx:100780558 1204.12