Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0667 ATGACAATCATGGGAAAGATATTGTTGACACTGTTATTATTGTCATCAATTTTCTCAATAGCTTCATCAAGAACAAGAAGATCTTCCAGCAACAACATAGATTGGTGGTGCAACCAAACCCCACACCCCGAGCCATGCAAATATTACATGAAACAAAGCCACTACCATCACACGCTTAAACACAAATCCGAATTCCGTGCATATCTAATTCACTTGGCCTTGGAGAGAGCACTCGTCATGCAAAATCAAGCACGTGATTTCGGGCAAAAACGCGTCACCAAGAAGCAGAAACATGTATACCGCGATTGTTTGAAGCTGTATGAGAACACTGTGTTTCATCTAAATCGTACCCTCCAAGGCCTACACGTTAAGAGGAGCTGTTCCCCGTTTGATGCACAAACGTGGCTTAGCACTGCTCGCACAAACCTCGAAACCTGTCTAAACGGAGCGTTAGAACTTGGCGTTCGAGATTTCATCGCTTCAACTTGCACTGAGAGAAGCAACGTGACGGAGATCATAAGCAATAGCTTATTCGTGAACTGGGCTTTCCTGAAACACGAAACGTTTCATTACACAGAAGATAGGGAAGGTGAGTTTCCGAGTTGGTTTTCTGTTCATGAGAGGAAGCTCTTGCAGTCTTCTTCAATAAGGGCACATCTTGTGGTAGCCAAAGATGGTTCTGGCCATTTCAAAAGTGTTCAAGCTGCTATTAATGCGGCATCGAGAAGAAGGTTGAAGACGAGGTTCATTATCCACGTAAAGAGAGGAGTTTATAGGGAGAACATTGAAGTTGACAAGACCAACGACAATATCATGTTGGTTGGTGATGGCATGAGATATACCATAATAACAAGTGCCAGGAGCGTTCAAGATGGCTTTACCACCTACAGTTCCGCTACAGCAGGAATCGATGGTCTTCACTTCATTGCACGTGACATTACCTTCAGAAACACGGCCGGTTCTCTTAAGGGTCAAGCAGTGGCACTTCGATCAGCCTCTGACCTCTCCGTTTTTTACCGTTGTGCCATCGAGGGCTACCAAGACACACTCATGGTTCATGCACAGCGACAATTTTACAGAGGATGTTACATCTATGGCACCGTTGACTTCATCTTTGGTAACGCAGCTGTTGTTTTTCAAAACTGTGTGATTCTCGTTAGAAGGCCTTTGAATGGCCAAGCAAACATGATCACGGCCCAAGGTAGAGATGACCCATTTCAAAACACTGGAATTTCAATCCACAATTCTCAAATAAGGGCTGCCCCAGATCTCAAGCCCGTTGTTGCCAACTTCAACACCTTTTTGGGCCGCCCATGGCAACGTTACTCAAGAGTTGTGGTCATGAAATCGTTCTTGGATAGCTTGGTGAGCCCAATGGGCTGGTCTCCTTGGGGGGATACTTCTTTTGCTCTCAACACGCTCTATTATGGAGAGTATAAGAACTTTGGGCCTGGTTCATCCACAAGAAACAGGGTCCGTTGGGCCGGTTTTCATTCTATAACCAGCCCAGCCGAGGCCTCACAGTTCACCGTTGGTACCCTCCTTGCTGGACGCACATGGTTGCCTGCAACTGGTGTGCCTTTCACTTCGGGCCTTTAA 1599 0.4597 MTIMGKILLTLLLLSSIFSIASSRTRRSSSNNIDWWCNQTPHPEPCKYYMKQSHYHHTLKHKSEFRAYLIHLALERALVMQNQARDFGQKRVTKKQKHVYRDCLKLYENTVFHLNRTLQGLHVKRSCSPFDAQTWLSTARTNLETCLNGALELGVRDFIASTCTERSNVTEIISNSLFVNWAFLKHETFHYTEDREGEFPSWFSVHERKLLQSSSIRAHLVVAKDGSGHFKSVQAAINAASRRRLKTRFIIHVKRGVYRENIEVDKTNDNIMLVGDGMRYTIITSARSVQDGFTTYSSATAGIDGLHFIARDITFRNTAGSLKGQAVALRSASDLSVFYRCAIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRRPLNGQANMITAQGRDDPFQNTGISIHNSQIRAAPDLKPVVANFNTFLGRPWQRYSRVVVMKSFLDSLVSPMGWSPWGDTSFALNTLYYGEYKNFGPGSSTRNRVRWAGFHSITSPAEASQFTVGTLLAGRTWLPATGVPFTSGL* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0667 532 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Apr5g0667 532 PANTHER PECTINESTERASE 1 531 - -
Apr5g0667 532 CDD PMEI-like_3 35 180 - -
Apr5g0667 532 Gene3D - 213 532 IPR012334 -
Apr5g0667 532 PANTHER PECTINESTERASE 1 531 - -
Apr5g0667 532 SUPERFAMILY Pectin lyase-like 216 531 IPR011050 -
Apr5g0667 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 180 IPR035513 -
Apr5g0667 532 Pfam Plant invertase/pectin methylesterase inhibitor 32 177 IPR006501 GO:0004857
Apr5g0667 532 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 180 IPR006501 GO:0004857
Apr5g0667 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 181 IPR035513 -
Apr5g0667 532 Pfam Pectinesterase 220 517 IPR000070 GO:0030599|GO:0042545
Apr5g0667 532 SMART PMEI_2 28 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0667 Apr-Chr5 9183968 9185919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0667 28 532 Carbohydrate Esterase AT3G47400 59.188 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0667 K01051 - gmx:100807908 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0667 5 9183968 9185919 Apr2g0861 2 13190324 13193566 PCT