Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0660 ATGGCTCGCGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCAGTGCACAGACAAGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTCAAAAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTTGCCACCAAAGGGACCATGCAAGGGCTCATTGAGAGGTACATGAAGTTCACAGGGGGGCCCCAGCCTGAAGCAGTCACTACTGAAGCAGATCCTCTGGATGCAAAAGAGGAAACCAATGTGCTAAAACAAGAAATTGAAACATTGCAAAAGGGTATCAGGTATTTATTTGAAGGAGGCAATGGCACAATGACAATAGACGAATTACAAGTGCTGGAGAAGAATCTCGAGGTTTGGATATATCATATTCGCTCGATGAAGATGAACATCTTGTTGCAAGAAATTCAAGCACTGAGAGATAAGGAGGGAACACTTAAAGCGACAAATAAATATCTCCACGATAAGATGGTGGAGAATACTGCACTTACTACCTTCACTCCATTTGCTACTGACACTTCGTACCCACTAATTATACAAGATGGGGCTTTTCAGCTCTATTAA 609 0.4466 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIERYMKFTGGPQPEAVTTEADPLDAKEETNVLKQEIETLQKGIRYLFEGGNGTMTIDELQVLEKNLEVWIYHIRSMKMNILLQEIQALRDKEGTLKATNKYLHDKMVENTALTTFTPFATDTSYPLIIQDGAFQLY* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0660 202 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Apr5g0660 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr5g0660 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr5g0660 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr5g0660 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr5g0660 202 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Apr5g0660 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr5g0660 202 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr5g0660 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Apr5g0660 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 - -
Apr5g0660 202 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 200 - -
Apr5g0660 202 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Apr5g0660 202 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr5g0660 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0660 Apr-Chr5 9095782 9098722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0660 1 201 MADS-box Gene Family AT1G71692 62.559 7.02e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr5g0660 K-box 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0660 - - gmx:100815314 348.591