Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0658 ATGGACTTAAAGTCGAATCATACTCCTGTTCTCACTGATGCTGCACCCGTAACAAAGTCTAGACTGGGTGTGCATTCCGGTTTGTTGCCTTACTCCCATACTGGGGCAACCTTTCCACATGGAATGTTATTGAATATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCATCACCTCCAGCCAGGAAGATAACGAAGGATGTTAGTCATGGGTTTGCATCATCTGATGCTGATACTACTAGTTCTTATTTTACCTGGCTGCTAAAATATCCATCTGCACTTACATCTTTTGACCAAATCACAAACTATGCAAAGGGAAAAAGAATCGCGTTATTTATGGATTATGATGGAACTCTTTCCCCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATATGCGTGCTGCCGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTATATGAATTTGTAGGACTAACAGAGCTCTATTATGCTGGTAGTCATGGGATGGACATCATTGGACCTGTTAGGCAATCTGTATCTGATAGTCACCCTAACTGCATCATTAGGTCTACGGACAAGCAGGGTAAGGAAGTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTAATGAGGTATTTAAGTCCCTTGTTGGGTGTACAAAAGACATTAAAGGAGCAAAAGTTGAGAACAATAAATTTTGTGTATCTGTACACTACCGCAATGTTGATGAAAAGAGTTGGGATTTGGTGGGGCAGCGAGTTCATGATGTTCTGAAGGACTATCCACGGTTGCGATTAACTCATGGGCGGAAGGTTTTAGAGGTCCGTCCTGTGATTAACTGGGATAAGGGTAAAGCTGTCACATTTTTGCTCGACTCACTTGGACTTAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACTGATGAAGATGCATTCAAGGTGTTGAAAGAGGGAAATAAAGGTTATGGAATCTTGGTGTCTTCAGCTCCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCACTTGTTTTATGGAAATCAAGCCCCTTAAAAAGCCTTATATAG 1173 0.4118 MDLKSNHTPVLTDAAPVTKSRLGVHSGLLPYSHTGATFPHGMLLNIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDVSHGFASSDADTTSSYFTWLLKYPSALTSFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIIGPVRQSVSDSHPNCIIRSTDKQGKEVNLFQPAAEFLPMINEVFKSLVGCTKDIKGAKVENNKFCVSVHYRNVDEKSWDLVGQRVHDVLKDYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLDSLGLNNCDDVLPIYIGDDRTDEDAFKVLKEGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVLWKSSPLKSLI* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0658 390 Gene3D - 230 387 IPR023214 -
Apr5g0658 390 Gene3D - 121 209 IPR023214 -
Apr5g0658 390 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 343 IPR006379 -
Apr5g0658 390 SUPERFAMILY HAD-like 122 381 IPR036412 -
Apr5g0658 390 TIGRFAM T6PP: trehalose-phosphatase 221 379 IPR003337 GO:0003824|GO:0005992
Apr5g0658 390 CDD HAD_TPP 122 373 - -
Apr5g0658 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Apr5g0658 390 Pfam Trehalose-phosphatase 124 369 IPR003337 GO:0003824|GO:0005992
Apr5g0658 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0658 Apr-Chr5 9068345 9076024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0658 115 378 Trehalose Biosynthesis Gene Families AT1G70290 25.887 5.16e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0658 K01087 - gmx:100819495 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0658 5 9068345 9076024 Apr5g0658 5 9068345 9076024 ECH