Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g0654 | ATGATTTTAATTCTTCTTCTCGCATCTAAATCTAAATCTTCTTCTTCTTCCCTTCTTTCTTTCACTGCTGAGGCTCAGATTAAAACCCTAACCCTATCTCTCCATTCCATGGACGCTCTCAATTCCAATCCTCCCTACGATCCCTCTCCACAGAACCATGCGCCGTCAGAGTATCACAACCCACCGCAACACCAATCGGAAACCCTGCTTTCCGACGCCAACGGTACCCACCACAGTGCCCACGGATACACATCGGAGAACGGCCAAGGCGCTGCCGACAACAATTCGCACCCTCAGGTTGCGAAACCCTTGGTCTCCGAGAATGGATTGACCGGTAATACACGCAGTGGCACCGACAAGGATCAATCTGGCGGCGAAGAGGAAACTACCAGCAAGCGCCGCCGCAGAAGCCGGTGGGACCCGCAGCCCGATTCCAATGATCCGAGCGGCGGCGATTCCGGGGCCGGAGCGAAGAAGAGGAAGTCCCGTTGGGCTGACGACGAGCCTAAGCCGGTGATTCAGCTACCTGATTTCATGGGCGGTATTGAATTCGATCCCGAGATCCAAGCTTTGAATAGTAGGCTGCTTGAGATTAGTCGAATGCTGCAATCCGGTTTGCCTTTAGATGATCGCCCAGAAGGTGCTCGATCTCCTTCTCCCGAGCCTATATATGATAACATGGGTATTAGAATTAACACTAGAGAATATCGTGCGCGTGAGAGGTTGCAAAAAGAGAGGCAAGAAATTATATCTCAGATTATAAAGAAAAACCCTGCGTTTAAGCCACCTGCTGATTATAGGCCACCCAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATACCCTGGTTACAATTTCATAGGGCTTATTATTGGTCCCAGAGGTAACACCCAGAAGCGAATGGAGAAAGAAACCGGTGCTAAAATAGTGATTCGAGGTAAAGGATCTGTGAAAGAGGGCAGACTGCAGCAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAAGATTTGCATGTTTTGGTGGAGGCGGAGACACAGGAATCGCTTGATGCTGCTGCGGGTATGGTGGAAAAGCTCCTGCAACCCGTGGATGAGGTGTTGAATGAGCACAAGAGGCAACAGCTTAGGGAGCTTGCTGCATTAAATGGGACGATTAGGGATGAAGAGTATTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATACGCATGTCCTACGAGGACTTCAACGTTTAAGAGCGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGCCACCCGAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTTCTGGCAGAGTTAGGAGGTTCAGTTCCTGAATCTGCAACGAAGCAAACCAGTACGTTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCAAACAATTCTGGTACGGCTGGCACTGCACCTCAGGCTGGCTTAGGGGCAAGTGCAGTTAAAAAAGAAATTGATGATACGAATTTATACATTGGGTATTTGCCACCCACTCTTGATGACGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAAATTGTTATGGCAAAAGTTATCAAGGATCGAATGTCGGGTTTAAGTAAAGGATATGGGTTTGTGAAGTATGCTGATGTCACAATGGCAAACAATGCAATCTTGGCCATGAACGGTTATCGCCTTGAGGGTCGAACCATTGCAGTGAGAGTTGCTGGTAGGCCACCTCAGCCTGTTGTACCTCCTGGCCCACCAGCATCTGCTGTGCCCACTTATCCTATTCCAAGCCAGCCACTTGGTGCTTATCCATCCCAACAGTATACTGCTGGTGGCCCCCTTACGAGTGCTCCTCCTGGGAGTTACGGTGGTACCCCTGTTCCATGGGGACCCCCTGTTCCTCCTCCATATGCTCCTTATGCTCCTCCTCCTCCTGGGTCAACTATGTATCCTCCCATGCAAGGTCAACCCATGCCTACTTATGGTGTTCAATATCCTCCAGTGCAGACAGCCCCCCCTGGTGCCCCATCCCAGCCTGCTACTTCAAGTGAAATACAGCAGAGTTACCCTCCAGGAGTGCAATCTGACAATAGTACCTCAACTCAGTCTGTACCAGCCAACGTCTATGGTAACTCGGTCCCTTCAATGCCACCAGCAGCGCCACCTACATATCCCGCTTCTTATGGATATCCACCTTACTATAATGCAGTTCCTCCACCACCTCCTCCTGCTGCCCCAATGCCTGTCTCAACTTCTGACCAATCCCACAGCATTGTAAATGTTCCTTGGGCCAGTAATCCTCTAGTTCCACCTCCTGCATCATCTGCAGATCAATCCCAGGGCATTGGAATTGTGCCTAGGGCCACAAATCCGCCAGTGCCTCCTCCTGCTTCATCAGCTGAGAAGACTTCATATGCTGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA | 2493 | 0.4966 | MILILLLASKSKSSSSSLLSFTAEAQIKTLTLSLHSMDALNSNPPYDPSPQNHAPSEYHNPPQHQSETLLSDANGTHHSAHGYTSENGQGAADNNSHPQVAKPLVSENGLTGNTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDPSGGDSGAGAKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGSGNSGSNPPWANNSGTAGTAPQAGLGASAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADVTMANNAILAMNGYRLEGRTIAVRVAGRPPQPVVPPGPPASAVPTYPIPSQPLGAYPSQQYTAGGPLTSAPPGSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPTYGVQYPPVQTAPPGAPSQPATSSEIQQSYPPGVQSDNSTSTQSVPANVYGNSVPSMPPAAPPTYPASYGYPPYYNAVPPPPPPAAPMPVSTSDQSHSIVNVPWASNPLVPPPASSADQSQGIGIVPRATNPPVPPPASSAEKTSYAADSEYEKFMAEMK* | 831 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g0654 | 830 | ProSiteProfiles | Zinc finger CCHC-type profile. | 393 | 407 | IPR001878 | GO:0003676|GO:0008270 | |
| Apr5g0654 | 830 | Pfam | Splicing factor 1 helix-hairpin domain | 160 | 267 | IPR032570 | - | |
| Apr5g0654 | 830 | SMART | kh_6 | 271 | 363 | IPR004087 | GO:0003676 | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 316 | 336 | - | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 465 | 490 | - | - | |
| Apr5g0654 | 830 | SUPERFAMILY | RNA-binding domain, RBD | 504 | 596 | IPR035979 | GO:0003676 | |
| Apr5g0654 | 830 | SMART | c2hcfinal6 | 392 | 408 | IPR001878 | GO:0003676|GO:0008270 | |
| Apr5g0654 | 830 | SMART | c2hcfinal6 | 418 | 434 | IPR001878 | GO:0003676|GO:0008270 | |
| Apr5g0654 | 830 | ProSiteProfiles | Zinc finger CCHC-type profile. | 419 | 433 | IPR001878 | GO:0003676|GO:0008270 | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 39 | 119 | - | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 207 | 226 | - | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 120 | 142 | - | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 780 | 817 | - | - | |
| Apr5g0654 | 830 | CDD | SF1_like-KH | 272 | 388 | - | - | |
| Apr5g0654 | 830 | Gene3D | K Homology domain, type 1 | 268 | 390 | IPR036612 | GO:0003723 | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 39 | 172 | - | - | |
| Apr5g0654 | 830 | PANTHER | BRANCHPOINT-BRIDGING PROTEIN-LIKE | 77 | 830 | - | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 782 | 796 | - | - | |
| Apr5g0654 | 830 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 510 | 579 | IPR000504 | GO:0003723 | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 659 | 717 | - | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 610 | 625 | - | - | |
| Apr5g0654 | 830 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 508 | 586 | IPR000504 | GO:0003723 | |
| Apr5g0654 | 830 | ProSiteProfiles | Type-1 KH domain profile. | 286 | 358 | - | - | |
| Apr5g0654 | 830 | Gene3D | - | 480 | 590 | IPR012677 | - | |
| Apr5g0654 | 830 | SUPERFAMILY | Retrovirus zinc finger-like domains | 389 | 435 | IPR036875 | GO:0003676|GO:0008270 | |
| Apr5g0654 | 830 | Gene3D | - | 391 | 444 | - | - | |
| Apr5g0654 | 830 | SMART | rrm1_1 | 509 | 582 | IPR000504 | GO:0003723 | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 154 | 170 | - | - | |
| Apr5g0654 | 830 | Gene3D | - | 185 | 263 | - | - | |
| Apr5g0654 | 830 | PANTHER | RNA-BINDING PROTEIN RELATED | 77 | 830 | IPR045071 | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 587 | 604 | - | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 587 | 638 | - | - | |
| Apr5g0654 | 830 | MobiDBLite | consensus disorder prediction | 686 | 717 | - | - | |
| Apr5g0654 | 830 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 271 | 397 | IPR036612 | GO:0003723 | |
| Apr5g0654 | 830 | Pfam | KH domain | 286 | 334 | IPR004088 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr5g0654 | Apr-Chr5 | 9020108 | 9025165 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr5g0654 | 508 | 639 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 30.935 | 1.16e-12 | 69.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g0654 | K13095 | - | gmx:100800982 | 1264.98 |