Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0649 ATGGAGAAGAACAACAGTAGAGTTTGCAAAATCTGCAATAAGTGCTTCTCCAGTGGAAAATCCATGGGAGGACACATGAGATCTCACTTGGCTAAATTGCCAATTCCTCCAAAGCCTGAAACCGAGAATCAATCACTAGACAACTCAGCAAAGTCAACCCACTGTTCAATTCAATCAGCTTCCTCACTGACTAGCCATCCCCAAAGGAAAACAACTCAGAATTTCAGATCATTGAAACACAACTTCTTAGCATCCTTGGCAAACTCAAATAGAGAAAACGAATCTGGGTCTTACCCTAAAAACCCAACTCGCAAAAGATCCAAATGCCACCGCAAATTTATTGCAGCAACCAAGATGAAAGCTGAACCAAAACAAGTGAATTCAAGCTTTGAATCTCTTCCTGTAGAAGAAGCTGCTAGGTCTCTACTAATGCTTTCCAAGGATAAATGGCCAGAAAGCAAAGAGATCAAGACACAAAAAACAAAGGAAACAAACAGGATGGAAGCAAAAGACAGTAAATATGGTAGAGATGACTCACTTGTTCAAACTCAATCTCAATTCAGGTTCAAGTGCAAGAGGTGTGGGAAAACATTTCAATCTTATCAAGCTCTCGGTGGGCATATAGCAAACCATTCGAAAAATGAAAAACTGTGCCAAGAAGTTCACCAATCTGGCGATGAGAGAAGTGGCAACAATAGTGATATTTTAGATCAAAACGTGTTTGAGTGCCCATACTGCTCCTAA 744 0.4032 MEKNNSRVCKICNKCFSSGKSMGGHMRSHLAKLPIPPKPETENQSLDNSAKSTHCSIQSASSLTSHPQRKTTQNFRSLKHNFLASLANSNRENESGSYPKNPTRKRSKCHRKFIAATKMKAEPKQVNSSFESLPVEEAARSLLMLSKDKWPESKEIKTQKTKETNRMEAKDSKYGRDDSLVQTQSQFRFKCKRCGKTFQSYQALGGHIANHSKNEKLCQEVHQSGDERSGNNSDILDQNVFECPYCS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0649 247 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Apr5g0649 247 MobiDBLite consensus disorder prediction 153 177 - -
Apr5g0649 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Apr5g0649 247 MobiDBLite consensus disorder prediction 19 71 - -
Apr5g0649 247 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 247 - -
Apr5g0649 247 Pfam C2H2-type zinc finger 8 31 - -
Apr5g0649 247 Pfam C2H2-type zinc finger 188 213 - -
Apr5g0649 247 Gene3D Classic Zinc Finger 187 247 - -
Apr5g0649 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Apr5g0649 247 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 247 IPR044303 GO:0006355
Apr5g0649 247 MobiDBLite consensus disorder prediction 85 102 - -
Apr5g0649 247 MobiDBLite consensus disorder prediction 85 108 - -
Apr5g0649 247 MobiDBLite consensus disorder prediction 41 71 - -
Apr5g0649 247 SMART c2h2final6 189 211 IPR013087 -
Apr5g0649 247 SMART c2h2final6 7 29 IPR013087 -
Apr5g0649 247 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Apr5g0649 247 SUPERFAMILY beta-beta-alpha zinc fingers 8 211 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0649 Apr-Chr5 8942921 8946908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0649 9 246 C2H2 Transcription Factor Family AT3G60580 29.365 2.32e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr5g0649 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0649 - - ccaj:109798515 286.189