Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0648 ATGATGGGGGAATCCAGTTCTAGGGTTTCCCCCACTCTTCAGCATTCCACTGCAGGCATCATCAAGAGACTTCGACTCGAGAACTTCATGTGCCACTCCAGTCACGAGACCGAGTTTGGAAACCACGTCAATTTCATCACCGGGCAAAATGGAAGTGGCAAGAGTGCAATCCTAACTGCATTGTGTGTTGCTTTTGGTTGTCGAGCCAAAGGGACTCAAAGGGCATCCACTCTCAAGGATTTCATTAAAACTGGTGCCAGTAATGCTGTCATCCAAGTTGAAATTCACAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTGATGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGTTCTACTACATTGAAAGACCACCAAGGAAAGAAAGTTGTCAGTCGGAAAGCAGATCTTCAAGAAATCATTGAGCATTTTAATATTGATGTGGAGAATCCTTGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTTTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATATCCAATGAAATAACTACTGCACATGTAATAGTTGAAGAATTAGAGACTGCAATAAGGCCCATAGAGAAGGAACTTAATGAGCTGCAAGTTAAAATTAAAAGTATGGAACATGTTGAACTAATATCCATGCAGGTTCAGCAGTTAAAGAAGAAACTTGCGTGGTCATGGGTTTATGATGTGGACAAGCAGCTAGAGGAACAAAATGTAAAGATTGAAAAGCTGAAAAACCGGATTCCTACTTGCCAAGCTAAGATTGATCAACAACTGCATTGCATTGAAAAGTTAAGGGAAAGCTGCTCCAAGAAGAAAGTTGAAATTGCAAGTATGTTGGAAAAGACATCACAAGTTAAGCAAATGAAAGGAAATTTAAACCAATCTGTGTCTCTGGCCAAGAAAGAAGCACTCGAACTTGAGCACGACTGTAAATGCAAAACTAGCAACATACAGAAGATGGTAAAGCAACTTAAAACACTTAAACAACAAGTGCAGGATATTCAGGAGCAGCATGTAAAAAATACCCAGGCTGAAGAATCTGAATTGGAGGAGAAACTGAAGGGGCTTCAAGATGAGGTTCGTGCTGCTGAGTTAGAGCTGAAAAGATTGAAAGAAGAAGAGGCTTTGCTAATGAGCAGCATACATAGGCAAAATGATGAAATCCGAAAGATAGCTGATAAGATCCATGCTCATGAAAAAAGATATCATGGTATTACACATCAAATCCATGATCTTCAGCAAAACCAAAGCAATCGGATTGCTGTTTTTGGAGGAGATAAAGTGATGAATCTGTTACGTATAATTGAGAGATATCATGAAAGGTTCAAGATGCCTCCGATAGGTCCAATTGGTGCCCACCTGAAGTTGCTTCATGGTAATAAATGGGCGGTTGCCCTTGAATATGCCATTGGGAGATTGCTCAATTCTTTTATAGTGACTGATCACTCAGATTTTCGTCTTCTGAAACAATGTGCAAGCGAAGTAAACTATGGTCACCTTCAAATTATTATTTATGATTTTTCAACCCCGAGGTTGACAATACCACATCACATGCTTCCTGATACAAAACATCCATCAATACTTTCTGTCTTACAATGTGAGAATCACACCGTGACTAATGTCTTAGTGGATCTGGGAAATGTTGAGAGACAAGTGCTTGTTAATGATTATGATGCTGGGAAAGCTGTTGCATTTGAACAAAGGATCCGAAATTTGAAGGAGGTCTATGCTGCTGATGGATGTAGAATGTTTTCGCGAGGTTCAGTGCAGACTGTTCTTCCTCCGAATAAGAGGCAAAGGACTGGTCGTCTTTCTGGTTCTTTCGATGATGAGATTGAGAATCTTCATATTGAAGCATCTGATGAACAAAAGGCAGCTTATGACTGTAAAAAGAATAAAAGAGAGGCAGAGATCAAGCTTGAGGAGCTTGACAAGAATATGAATTCTATAAAGAGGCTTTGTGTAAATGCAGGAAAAAGTTTGACTTCTAAGAAGTTTGCTTTGGAGGAGGCAATGCATTTGCGCACTGCTGAAAATAGTTCAACACCTTTGTCCTCCGTTGATGAGCTCATTAAAGAAATTTCAGAAATTGAAAAAAAAATAAAACAAGAGCAAATGACATTGGAAGGCCTTCAGCAAAAAGGGTGTGAAGCAGCAGGAAAAGCAGATGATCTTAAAGTAGAATTTGACAAACTGTGTGAATCAGCAAACGTGGAAATTGCTGCCCTAGAGAAAGCTGAGTGTGAACTTATGGAAATTGAAAAAGAAATGGGTTTGACAAAAAAGGCAAAGGATCATTATGATGGTGTCATGAAAAACAAAGTCTTAGTTGATATTAAGGAGGCAGAAGTACACTATCTTGATCTTACAAAGAGGCGCGAGGAAAGTGTTGAAAAGGCTTCTATAATTTGCTCGCTGAATGAGCTTGATTCATTAGGAGGTTGTGATGGGCATACCCCAGAGCAAATCAGTGCCCAATTGGAAGGATTAAATCAGACTCTTAGACGTGAGAGCCAAAGGTATTCTGAATCAATTGATGATCTTAGGATGCTGTATGACAAAAAAGAACGTAAGATTATAAAAAGGCAGCAGGTTTACAAAACACTTCGACAGAAATTGGATGCTTGCCAGAGAGCCTTAGAGTTACGACAGAGAAAGTTTCAGAGAAATGCTACTTATTTGAAACACCAGCTTTCTTGGAAATTTAATGGCCATTTGAGAAAGAAGGGGATCAGTGGACTTATCAAAGTTAATTATGAGGAGAAAACCTTAATGATTGAGGTACAAATGCCCCAAGATACGTCAAACAGAGCTGTTCGAGACACTCGAGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACATTGTGCTTTGCATTGGCCCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTGAGCCGAAAAATCAGCTTGGACACTCTGGTTGATTTTGCTGAGGCTCAAGGATCACAGTGGATATTCATCACCCCGCATGATACTAGCTCGGTGAAGGCTGGGGATAGGATAAAGAAGATGCAAATGGCAGCTCCACGTTCATGA 3174 0.3976 MMGESSSRVSPTLQHSTAGIIKRLRLENFMCHSSHETEFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIQVEIHNEGEDAFKPEIYGDVIIVERRISESTSSTTLKDHQGKKVVSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISNEITTAHVIVEELETAIRPIEKELNELQVKIKSMEHVELISMQVQQLKKKLAWSWVYDVDKQLEEQNVKIEKLKNRIPTCQAKIDQQLHCIEKLRESCSKKKVEIASMLEKTSQVKQMKGNLNQSVSLAKKEALELEHDCKCKTSNIQKMVKQLKTLKQQVQDIQEQHVKNTQAEESELEEKLKGLQDEVRAAELELKRLKEEEALLMSSIHRQNDEIRKIADKIHAHEKRYHGITHQIHDLQQNQSNRIAVFGGDKVMNLLRIIERYHERFKMPPIGPIGAHLKLLHGNKWAVALEYAIGRLLNSFIVTDHSDFRLLKQCASEVNYGHLQIIIYDFSTPRLTIPHHMLPDTKHPSILSVLQCENHTVTNVLVDLGNVERQVLVNDYDAGKAVAFEQRIRNLKEVYAADGCRMFSRGSVQTVLPPNKRQRTGRLSGSFDDEIENLHIEASDEQKAAYDCKKNKREAEIKLEELDKNMNSIKRLCVNAGKSLTSKKFALEEAMHLRTAENSSTPLSSVDELIKEISEIEKKIKQEQMTLEGLQQKGCEAAGKADDLKVEFDKLCESANVEIAALEKAECELMEIEKEMGLTKKAKDHYDGVMKNKVLVDIKEAEVHYLDLTKRREESVEKASIICSLNELDSLGGCDGHTPEQISAQLEGLNQTLRRESQRYSESIDDLRMLYDKKERKIIKRQQVYKTLRQKLDACQRALELRQRKFQRNATYLKHQLSWKFNGHLRKKGISGLIKVNYEEKTLMIEVQMPQDTSNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAQGSQWIFITPHDTSSVKAGDRIKKMQMAAPRS* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0648 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1050 IPR027417 -
Apr5g0648 1057 Coils Coil 894 914 - -
Apr5g0648 1057 Coils Coil 764 791 - -
Apr5g0648 1057 SUPERFAMILY Smc hinge domain 428 597 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Apr5g0648 1057 Coils Coil 715 742 - -
Apr5g0648 1057 CDD ABC_SMC6_euk 21 175 - -
Apr5g0648 1057 Coils Coil 254 281 - -
Apr5g0648 1057 Gene3D - 845 1054 IPR027417 -
Apr5g0648 1057 Coils Coil 208 228 - -
Apr5g0648 1057 Coils Coil 654 681 - -
Apr5g0648 1057 Coils Coil 345 429 - -
Apr5g0648 1057 CDD ABC_SMC6_euk 958 1057 - -
Apr5g0648 1057 Coils Coil 289 309 - -
Apr5g0648 1057 Gene3D - 20 225 IPR027417 -
Apr5g0648 1057 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 12 1057 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Apr5g0648 1057 Pfam RecF/RecN/SMC N terminal domain 21 1052 IPR003395 -
Apr5g0648 1057 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1057 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0648 2 1057 Structural Maintenance of Chromosomes family AT5G61460 58.507 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0648 K22804 - gmx:100816916 1704.49