Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0559 ATGACGATCACCTCACATGTTATTACATGCAAAGCTGCGATATGCTGGGGTGTAGGGAAGCCTCTGACAGTGGAAGAGATACAAATAGACCCACCAAAAGCCACTGAAGTTCGAGTTAAGATGCTTTGTGCCAGTGTATGCCACACAGACATCTCAAGCACTCAAGGGTTCCCACATGCCAATTTTCCTATAGCACTTGGACACGAAGGAGTTGGTGTTGTAGAGAGTGTCGGTGATCAAGTGAAAAATCTGAAACAAGGGGATGTAGTAATTCCAACATACATAGGTGAATGCCAAGAATGTGAAAACTGTGTTTCAGGCGAATCCAATTTGTGTTTCACATACCCTATAAGATTGACTGGTCTAATGCCAGATAACACTTCAAGGATGTCCATTAGAGGCCAGAGGCTACACCATGTTTTAAGTTGCGCAACATGGTCAGAGTACATGGTTATTGATTCCAACTACATTCTCAAGGTTGATTCAAGGATTGATCCAGCCCATGCCAGTTTCATCTCATGTGGGTTTTCAACTGGTTTTGGAGCTGCTTGGAGGGAAGCCAAGGTTAAAAGTGGATCAAGTGTAGCTGTTTTCGGTCTTGGGGCTGTAGGATTAGGGGCTGTAAGCGGAGCCAAGATGCAAGGAGCAACTAAGATAATTGGAATTGACAAAAATGAAATGAAGAGAGAAAAAGGAGAAGCTTTTGGAATAACTGACTATATAAATCCTGCTGATTCAGATAAGTCTGTTTCAGAATTGGTGAAGGAACTGAGCGGTGGAATGGGTGTGGACTATTCCTTTGAGTGCACTGGAGTTGCCCCTTTACTTACTGAGTCCTTGGAAGCCACAAAAATGGGAAAGGGTAAAACAATAGCAATTGGTACAGGAACTGAGCCAATTGTGCCGCTTGGTCTTGCTAGCATCATGTATGGTAGAACTCTGAAAGGTTCCGTTTTTGGAGGGCTAAAAGCCATTTCGGACCTGTCAATCACAGCTAATAAATGCCAGAAAGAGGAATTCCCTCTTCAAGAACTACTCACACATGAGGTCGCATTGGCAGATATAAACAAAGCATTTGAGCTATTGAAACAACGCAATTGTGTGAAAGTTGTCATCAAGATATCGTATTAG 1131 0.4288 MTITSHVITCKAAICWGVGKPLTVEEIQIDPPKATEVRVKMLCASVCHTDISSTQGFPHANFPIALGHEGVGVVESVGDQVKNLKQGDVVIPTYIGECQECENCVSGESNLCFTYPIRLTGLMPDNTSRMSIRGQRLHHVLSCATWSEYMVIDSNYILKVDSRIDPAHASFISCGFSTGFGAAWREAKVKSGSSVAVFGLGAVGLGAVSGAKMQGATKIIGIDKNEMKREKGEAFGITDYINPADSDKSVSELVKELSGGMGVDYSFECTGVAPLLTESLEATKMGKGKTIAIGTGTEPIVPLGLASIMYGRTLKGSVFGGLKAISDLSITANKCQKEEFPLQELLTHEVALADINKAFELLKQRNCVKVVIKISY* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0559 376 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
Apr5g0559 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Apr5g0559 376 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
Apr5g0559 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 330 IPR036291 -
Apr5g0559 376 Gene3D - 14 369 - -
Apr5g0559 376 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Apr5g0559 376 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Apr5g0559 376 CDD liver_alcohol_DH_like 8 373 - -
Apr5g0559 376 Gene3D - 179 317 - -
Apr5g0559 376 SUPERFAMILY GroES-like 5 190 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0559 Apr-Chr5 7678882 7680800 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0559 35 366 Monolignol Biosynthesis Gene Families AT2G21730 27.353 5.62e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0559 K00121 - gmx:100798341 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0559 5 7678882 7680800 Apr5g0559 5 7678882 7680800 ECH