Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0556 ATGAATTATGTAAGAGAAGCTGCGCATGTCGACCCCATTTCCGTAGTAATGGCTGCTGCTGACAACACCAACCCAAAGGATTATTACAAAGTGCTGGAGGTTGAGTATGATGCAACTGATGAAAATATCAAATTGAATTACCGACGACTTGCACTGAAATGGCATCCTGACAAGCACAAAGGTGACAGTGACGTTACCGCAAAATTTCAGGAGATAAATGAAGCTTACAATGTTTTAAGTGATCCTGCCAAGCGTTTTGATTATGATTTAACTGGGATATGTGAGATTGAAAAGTATAGCTTGCAGGAATATCTTGCCAGATTTAAAGGCATGATTCTTACCTGCAATGGACTTGGCATCAACCAAACCGACAGATGGTCACAACAATTGATTGAAAATTTTGAATCCCTAGATAAATAA 420 0.3905 MNYVREAAHVDPISVVMAAADNTNPKDYYKVLEVEYDATDENIKLNYRRLALKWHPDKHKGDSDVTAKFQEINEAYNVLSDPAKRFDYDLTGICEIEKYSLQEYLARFKGMILTCNGLGINQTDRWSQQLIENFESLDK* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0556 139 SMART dnaj_3 26 84 IPR001623 -
Apr5g0556 139 Gene3D DnaJ domain 14 108 IPR036869 -
Apr5g0556 139 PRINTS DnaJ domain signature 29 47 IPR001623 -
Apr5g0556 139 PRINTS DnaJ domain signature 47 62 IPR001623 -
Apr5g0556 139 PRINTS DnaJ domain signature 64 84 IPR001623 -
Apr5g0556 139 Pfam DnaJ domain 27 89 IPR001623 -
Apr5g0556 139 SUPERFAMILY Chaperone J-domain 24 112 IPR036869 -
Apr5g0556 139 CDD DnaJ 27 81 IPR001623 -
Apr5g0556 139 PANTHER DNAJ PROTEIN-LIKE 17 131 - -
Apr5g0556 139 ProSiteProfiles dnaJ domain profile. 27 92 IPR001623 -
Apr5g0556 139 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 17 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0556 Apr-Chr5 7572963 7577824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0556 17 89 C2H2 Transcription Factor Family AT1G74250 39.744 6.00e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0556 - - gmx:100527491 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0556 5 7572963 7577824 Apr5g0556 5 7572963 7577824 ECH