Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0550 ATGAGAGATATTTGCAGAAATTTCCAGCGAGGCAGCTGTAAATATGGAGACAGGTGTAGATATTTGCATGCACTCCAACCACAGCGAAAACCCAATGTTCATGGGTTTGGAGGACAGGGAAGTTCTCACCAACAGCAAAATTCAAATCCTTTTGGATTTGGGTCTCATGCTGCCTCTGCCTCGCACCAGCAGCAAAAGACCAATCCTTTTGGTTTTGGCAGCTCCCAGCTAAATGGGGTCTCCCATTCTGAGTCCAGACCTAACCAATTCAAGTCTTTTGAAAACAAATGGAATCGACAGTCATCCAAACCCCAGAAATCTGATAACAACTCACAGCCGGTGAATCATCAATGCACAGATCCTGATATCTGCAAGCGCCAGATTGCAGAAGATTTTGAGCAAGAGAAACCGCTTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTATTGGTGATATTAGCTATGAAGAATTGCGTGCAGCAGCTTATGAGGATGCTAAAAATGGGATGAGCTTGCAATCAATAGTTGAGAAGGAGAGGAACATACTAAAATCCAAGTTGGTGGAGTTTGAGAAACTACTTTCTGAACCCTACAAAATGCCCCTAAATTCTTCTCTTGACAGTCAAAAACACCAATCTGTTGGAGTCAATGCAAATCCGTTTTCAAATACTTCTCAAAATAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCATTGAACATGGGTTTTGAAAGGCCCTCTGCTCCACTGACAAACACCCTGGCCCAGCCTAGTTTCCTTGGAAGTGGAGGAAACTCTTTCACATCCAACACAGCAAACCTGAACATCAGTGGCATCTTCAGTGCTCAAAGCAGCACCTATTCTAGACCAGTGGAGTTGACAATGTTTCCAGGTTCAACTTCAACTTCTCAGCAAACATCCATTGCCTTCAATAACTCTGGTCCTACTACAATGTTTCAAACAACACCGGATGTTCAGTTGTTAAATAAGTCCCAAGTGGAGAATGTGTCGGGAGATGTCAGTATTTGGTTAAAAGAGAAATGGAATCCGGGAGAGATTCCAGAAGAAGCTCCTCCTGATACACTTGTACGGTAG 1122 0.434 MRDICRNFQRGSCKYGDRCRYLHALQPQRKPNVHGFGGQGSSHQQQNSNPFGFGSHAASASHQQQKTNPFGFGSSQLNGVSHSESRPNQFKSFENKWNRQSSKPQKSDNNSQPVNHQCTDPDICKRQIAEDFEQEKPLWILTCYSHCKGAPCDIIGDISYEELRAAAYEDAKNGMSLQSIVEKERNILKSKLVEFEKLLSEPYKMPLNSSLDSQKHQSVGVNANPFSNTSQNNGPLSVSSFSQLGASLNMGFERPSAPLTNTLAQPSFLGSGGNSFTSNTANLNISGIFSAQSSTYSRPVELTMFPGSTSTSQQTSIAFNNSGPTTMFQTTPDVQLLNKSQVENVSGDVSIWLKEKWNPGEIPEEAPPDTLVR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0550 373 Gene3D - 1 55 - -
Apr5g0550 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 61 371 - -
Apr5g0550 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 59 - -
Apr5g0550 373 PANTHER MAKORIN-RELATED 61 371 IPR045072 -
Apr5g0550 373 PANTHER MAKORIN-RELATED 2 59 IPR045072 -
Apr5g0550 373 MobiDBLite consensus disorder prediction 35 118 - -
Apr5g0550 373 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Apr5g0550 373 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Apr5g0550 373 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Apr5g0550 373 MobiDBLite consensus disorder prediction 30 119 - -
Apr5g0550 373 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr5g0550 zf-CCCH_4 1.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0550 K14321 - gmx:100814339 573.933