Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0544 ATGATGGGGAGAACACCATGCAGTGATGAAAGTGGTTTGAAGAAGGGACCATGGACTCCAGAGGAGGATAGAATTTTGGTGGATTACATTCAGAAACACGGCCATGGGAGTTGGAGAGCACTTCCAAAGCTTGCAGGATTGAATAGGTGTGGGAAGAGTTGCAGGCTAAGGTGGACTAACTATTTGAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAACAGCAACTAATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATTAAGAATTTGTGGAACACTCATTTAAAGAAAAAGCTTTTGCAAATGGGATTAGATCCAGTGACTCATCGTCCAAGACAAGATCACCTTAGTCTTATATCCAATCTCCAACAGTTGCTGGCTGCTACAAACATTGTGAGTAATTTCACAAACACTTGGGATATTAATGCTCTAAAGCTGCAATCAGATGCCACACAACTAGCCAAACTCCAATTGCTGCAAAACATACTTCAAGTACTTGGTGCTAATCCTACCTCAAACTTGGAGCTTCTCAATCCATTTGGATCATCATCCTCACTGCCAGAAGGTTTTCTGTATGAAGTTTTAGGATTGAATAACTCTAAGCTCCAAAACCTTTATAATAGTTCAACTGGTTTTCCTTCTCAAAATCAGCCAAATTTCCAAAGCTTTGAAGCCCCTCATCAGCAGCAAGCTCTATCCATTGGGTATCACCACATGAATGGATGCAGTGATAGTAATTGCATGAAATTTCAAAAGGTTGATGAACAACTTGATGCCCCAAATTCTTCCTCAACACCGTTGAATTCTCTTCCAAATCTTGTTTCAGCCTCACCTGAACGTTCCACTCTCAAGCAAATGGAAAACAACGTAAACCCAAATGAGTGTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAAGCGATGCTTATTGGAAAGATCTCATAGAGTAA 1026 0.4064 MMGRTPCSDESGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEQQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNLWNTHLKKKLLQMGLDPVTHRPRQDHLSLISNLQQLLAATNIVSNFTNTWDINALKLQSDATQLAKLQLLQNILQVLGANPTSNLELLNPFGSSSSLPEGFLYEVLGLNNSKLQNLYNSSTGFPSQNQPNFQSFEAPHQQQALSIGYHHMNGCSDSNCMKFQKVDEQLDAPNSSSTPLNSLPNLVSASPERSTLKQMENNVNPNECSSTSTTFEMWGDFMYEEVSDAYWKDLIE* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0544 341 PANTHER MYB TRANSCRIPTION FACTOR 4 341 - -
Apr5g0544 341 SMART sant 67 115 IPR001005 -
Apr5g0544 341 SMART sant 14 64 IPR001005 -
Apr5g0544 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr5g0544 341 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Apr5g0544 341 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Apr5g0544 341 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Apr5g0544 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 341 - -
Apr5g0544 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Apr5g0544 341 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr5g0544 341 MobiDBLite consensus disorder prediction 275 296 - -
Apr5g0544 341 Gene3D - 70 117 - -
Apr5g0544 341 CDD SANT 70 113 IPR001005 -
Apr5g0544 341 Gene3D - 14 67 - -
Apr5g0544 341 CDD SANT 17 62 IPR001005 -
Apr5g0544 341 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0544 Apr-Chr5 7428002 7429153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0544 2 341 MYB Transcription Factor Family AT5G16770 50.833 2.29e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g0544 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0544 K09422 - gmx:547488 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0544 5 7428002 7429153 Apr5g0544 5 7428002 7429153 ECH