Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0536 ATGTCAGAAGCAGCTACTTCTATTGCAACCTCACACAGCACACCATTGTGCACGCCTAAAACAACCACTACCGAGCTAAACCAATCAAAACTCGAAACTACCCACATTTTCAAATCAAAATTACCAGACATACCCATTCCCAACAATCTCCCACTCCACACATTCTGCTTCCAAAAGCTTTCCCAACACGCCGACCGGCCATGCCTCATTGCCGGCGACAGAACCTTCACCTACGCCGACACTCATCTCGCAACTCGAAAGGTGGCCGCCGGCATGTCCAAACTCGGCATCAAAAAGGGTGACGTCGTCATGATTCTCCTCCCCAACTGCCCCGAGTTCGTGTTATCATTCATGGCGGTGTCCATGCTCGGCGCCGTCGTCACCACCGCCAATCCATTCTACACCGCCGCTGAACTCTCCAAGCAACTCGATGCCTCCAAAGCCAAGCTCGTCGTGACTCGATCCGTTTACGTGCAAAAGCTCAAGCTCGGGGAGGGTTACGAGGTGGTTACCGTGGACGATCCGCCGGAGAACTGTTTGTCGTTCTGGACGGTTGGGGAAACGGAAGATGGAGAGGTTCCGGAGGCGGAGATTGCGGCGGAGGACCCGGTGGCGCTGCCTTTTTCGTCTGGGACGACGGGGCTGGCGAAGGGGGTGGTGCTGACGCACAAGAGCTTGGTGACGAGTGTAGCGCAGCAAGTGGAGGGAGAGAACCCGAACTTGTACATGAAGGAAGAGGACGTTGTGCTCTGTGTTCTTCCTCTGTTTCACATATTCTCTATGCACTGCGTGATGATGTGCGCTTTGAGAGCGGGAAGTGGGATTTTGCTGATAGAGAGGTTTGAGATAAGGGGATTGTTGGAAGCCATAGAGAAGCACAAGGTTTCGGTGGCGATGGTGGTGCCTCCCCTTGTTGTGGCTCTGGCTAAGAACCCTGCTGTTGGGGACTATGACCTTAGCTCTATTCGCTTGGTTATGTCTGGTGCTGCACCCCTTGGCAAGGACCTTGAAGATGCTCTCAGAACCAGGTTGCCTCATGCAGTTCTTGGACAGGGGTATGGGATGACAGAAGCTGGGCCCGTGTTGGCTATGAGTATGGGCTTCGCAAAGCAGCCAATCCCAACGAAGTCAGGGTCATGCGGCACTGTGGTCAGAAATGCAGAGTTGAAGATCGTTGACCCAAAAAGTGGTTTTTCCCTTCCTCGTAACCACTCTGGCGAGATTTGTATCCGAGGCCAACAAATCATGAAAGGATACCTGAATGATGAGAAGGCCACCGCCGCAACTATTGATGTTGATGGTTGGCTTCATTCGGGTGATATAGGCTACGTAGATGACGATGATGAGATTTTCATCATTGACCGAGTCAAGGAACTCATCAAGTTCAAAGGCTTCCAGGTGCCGCCAGCAGAACTGGAAGGCCTTCTCATGAGCCACCCTTCCATTGCAGATGCAGCTGTTGTCCCGCAAAAGGATGATGCTGCCGGTGAAGTTCCGGTTGCTTTCGTCGTGAGCTTTGATCTTACAGAAGAGGCTGTGAAGGATTTTATAGCTAAACAGGTAGTGTTTTATAAAAGACTACACAAAGTGTATTTTGTTCATGCAATTCCAAAGTCTCCATCCGGAAAGATATTAAGAAAAGAACTGAGAGCAAAGCTTGAGAGCATCGTTCAGACAGCTTAG 1683 0.5128 MSEAATSIATSHSTPLCTPKTTTTELNQSKLETTHIFKSKLPDIPIPNNLPLHTFCFQKLSQHADRPCLIAGDRTFTYADTHLATRKVAAGMSKLGIKKGDVVMILLPNCPEFVLSFMAVSMLGAVVTTANPFYTAAELSKQLDASKAKLVVTRSVYVQKLKLGEGYEVVTVDDPPENCLSFWTVGETEDGEVPEAEIAAEDPVALPFSSGTTGLAKGVVLTHKSLVTSVAQQVEGENPNLYMKEEDVVLCVLPLFHIFSMHCVMMCALRAGSGILLIERFEIRGLLEAIEKHKVSVAMVVPPLVVALAKNPAVGDYDLSSIRLVMSGAAPLGKDLEDALRTRLPHAVLGQGYGMTEAGPVLAMSMGFAKQPIPTKSGSCGTVVRNAELKIVDPKSGFSLPRNHSGEICIRGQQIMKGYLNDEKATAATIDVDGWLHSGDIGYVDDDDEIFIIDRVKELIKFKGFQVPPAELEGLLMSHPSIADAAVVPQKDDAAGEVPVAFVVSFDLTEEAVKDFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKELRAKLESIVQTA* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0536 560 Pfam AMP-binding enzyme 59 462 IPR000873 -
Apr5g0536 560 Gene3D - 27 456 IPR042099 -
Apr5g0536 560 ProSitePatterns Putative AMP-binding domain signature. 206 217 IPR020845 -
Apr5g0536 560 Coils Coil 546 560 - -
Apr5g0536 560 MobiDBLite consensus disorder prediction 1 21 - -
Apr5g0536 560 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 35 552 - -
Apr5g0536 560 CDD 4CL 46 549 - -
Apr5g0536 560 Gene3D - 457 557 IPR045851 -
Apr5g0536 560 SUPERFAMILY Acetyl-CoA synthetase-like 39 555 - -
Apr5g0536 560 PANTHER 4-COUMARATE--COA LIGASE 3 35 552 - -
Apr5g0536 560 Pfam AMP-binding enzyme C-terminal domain 471 543 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0536 Apr-Chr5 7291162 7294452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0536 27 488 Monolignol Biosynthesis Gene Families AT3G21240 62.845 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0536 K01904 - gmx:100790396 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0536 5 7291162 7294452 Apr5g0536 5 7291162 7294452 ECH