Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0533 ATGGGAACGCGAGCTTGTGGAGACGAAGAGGATGAGGAGCTATTCGGTGGTGGAACCACCATTTCCGGCCAATCAGCCTCCACCAGCAGAAGCGCTGGCTTGCCGCCACCCGCCGATAACACTTTTCTCAAATTAAATCAACTTGACATTCACGCAGACGATGCTGGATCGCACGCAGCAGTTGCTAGCAAGAAGAAAAAGAGAGGACAACGTGCAGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTTGCTGAATTTGCTGACCCAAGCAATAGTGTTTTGTCCCCTGATCAGCAACAATACGATGAGAAAAACATTCGTCGAAGAGTCTATGATGCTCTAAATGTTCTCATGGCAATGGATATTATTTCTAAGGACAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTTTGAACGACATTGAAGAACTAAAGACTGAGCGTCTTGGGCTCAGGAATAGAATTGAAAAAAAGGCAGCCTATCTGCAGGAGCTCGAGGGTCAATTCGTAGGTCTTCAAAACCTTATTCAACGAAATGAGCAACTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTTTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAACAGTACTCCTTTTGAGCTGCATGACGACCATTATGTTCTCAAGGCAATGAAATTCTGTGAGAGACCACAGGGTGATAATTTGACACACAATCTTACTGATGGAGGTGAAGGTTCTAGCATGTCCGGCTTGTGTCAGTCACAGGTTCCTCCTTCAGTTTCAAATGTGTCCATTCGGCCTCCCTCATCACCACCGCTTCCTGGCATATTAAAGGCAAGAGTCAAGCAAGAGCACTAA 990 0.4475 MGTRACGDEEDEELFGGGTTISGQSASTSRSAGLPPPADNTFLKLNQLDIHADDAGSHAAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSVLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEGQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDHYVLKAMKFCERPQGDNLTHNLTDGGEGSSMSGLCQSQVPPSVSNVSIRPPSSPPLPGILKARVKQEH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0533 329 MobiDBLite consensus disorder prediction 1 40 - -
Apr5g0533 329 Coils Coil 190 210 - -
Apr5g0533 329 Pfam Transcription factor DP 168 278 IPR014889 -
Apr5g0533 329 SUPERFAMILY "Winged helix" DNA-binding domain 80 161 IPR036390 -
Apr5g0533 329 SUPERFAMILY E2F-DP heterodimerization region 166 281 IPR037241 -
Apr5g0533 329 MobiDBLite consensus disorder prediction 18 35 - -
Apr5g0533 329 CDD DP_DD 165 268 IPR014889 -
Apr5g0533 329 Pfam E2F/DP family winged-helix DNA-binding domain 80 160 IPR003316 GO:0005667|GO:0006355
Apr5g0533 329 PANTHER DP TF 21 329 - -
Apr5g0533 329 MobiDBLite consensus disorder prediction 279 307 - -
Apr5g0533 329 Gene3D Transcription factor DP 166 306 IPR038168 -
Apr5g0533 329 Gene3D - 72 165 IPR036388 -
Apr5g0533 329 SMART E2F_TDP_2 77 160 IPR003316 GO:0005667|GO:0006355
Apr5g0533 329 PANTHER TRANSCRIPTION FACTOR DP 21 329 IPR015648 GO:0005667|GO:0051726
Apr5g0533 329 SMART DP_2 167 327 IPR014889 -
Apr5g0533 329 PIRSF Txn_factor_DP 15 329 IPR015648 GO:0005667|GO:0051726
Apr5g0533 329 MobiDBLite consensus disorder prediction 279 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0533 Apr-Chr5 7251954 7255525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0533 78 269 E2F-DP Transcription Factor Family AT5G02470 55.959 6.82e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Apr5g0533 DP 5.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0533 K04683 - qsu:112000390 540.036