Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0527 ATGGTGAGGCTTCAGACATATGCGGGTCTTAGTTTGATTGCAACTCTGGCTATTACATATCATGCATTTAACAGTAGAGTCCAATTTTATCCGGCAATGATTTATCTGGCAACTTCCAAGATCAGTTTGGTACTTCTTCTCAACATGGGTTTGGTCATCATGTGTGTTATGTGGCAGATAACTAAAAAGGTGTTCCTTGGTTCCCTTCGAGAGGCTGAGGTTGAGAGGCTTAATGAGCAATCGTGGAGGGAGCTTATGGAAATCCTCTTTGCAATTACTATCTTTAGACAGGATTTCTCTATTACATTCCTTGCCATGGTCACTGCACTCTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTTGAGTACATCGAGACTACTCCTTCTGTGTCCATGTTGTCTCAGGTTCGAATCGTATCTTTCATCGGTTTCCTTCTTCTTCTGGATGGCCTCTTTGTGTATAGTTCTGCGAAGCATTTGATACAATCACGGCAGGCTTCGGTTTCGCTCTTCTTTTCTTTTGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATATCTTTTATGTTAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAACCAATCTTCACGTTTTACCTGGAACTTATTAGGGATTTGCTTCACTTGTCAATGTATCTGTGCTTCTTTATTGTAATTTTCATAAACTATGGAGTTCCTTTGCACTTAATAAGGGAGCTGTACGAGACATTTAGAAACTTCAAAGTTCGTGTTGCAGATTACATACGTTATCGCAAGATTACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGTAAGTGATGCAACCTGCATTATCTGTCGCGAAGAGATGATCACCGCCAAGAAACTTGTGTGCGGGCACCTTTTTCATGTTCATTGCCTTCGATCATGGCTGGAGCGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGTACCACCAGAAAATGGGACAACTGCTGCTGGAAGGCGGCAAGGATCACAGTCAGATGCTCACCAATATGGCACTGGAAGCGCAGCTCAAGCTGAGATTGGCAATGGGGTGGCTACTGATAATTTGAGTCGGCATCAAGCAAGGCTCCAAGCTGCTGCTGCAGCAGCAGCTTCAATATATGAGAAATCTTATGTTTACCCCTCTGCAACTTCTTTTGTATGGTCCCCTGGATACACTCTCTATCCTCCAGTTCAAAGATCTTTGGCCGAATCATCTGGTAATGAGCTCAATGGAGAACAAGCTTCCATTGAGCAAGCACAAAAGCAGTTTGTTATCCCTGATGGACCACTGAGTGCATCCATTCCTCCAATGGGGAACTTTAATTTTCTACCTTCCCAAACACATGTAGCCCACATGAATTATGGAGAGGGATTTATAAATGATCCAAATATGCCAAACTCTCAGCAGGAAGCTCAAAGAAAACTCCAGATTGAGCTTTTGCAAAATCAGGTTCAGATTCTGCAAAATCAGCTCCAACTTCTGGAGAAGGCAAATGTTGAAAAAGATATAGATGAAGACACATCATTATCAGATAGCAGAGGCAAGCACATCACTGCCCCTTCATCATCTAGTCATGAGGAGATTCAAGACACTGAAGCATAA 1662 0.4248 MVRLQTYAGLSLIATLAITYHAFNSRVQFYPAMIYLATSKISLVLLLNMGLVIMCVMWQITKKVFLGSLREAEVERLNEQSWRELMEILFAITIFRQDFSITFLAMVTALLLIKALHWLAQKRVEYIETTPSVSMLSQVRIVSFIGFLLLLDGLFVYSSAKHLIQSRQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWERKPIFTFYLELIRDLLHLSMYLCFFIVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNVSDATCIICREEMITAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAGRRQGSQSDAHQYGTGSAAQAEIGNGVATDNLSRHQARLQAAAAAAASIYEKSYVYPSATSFVWSPGYTLYPPVQRSLAESSGNELNGEQASIEQAQKQFVIPDGPLSASIPPMGNFNFLPSQTHVAHMNYGEGFINDPNMPNSQQEAQRKLQIELLQNQVQILQNQLQLLEKANVEKDIDEDTSLSDSRGKHITAPSSSSHEEIQDTEA* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0527 553 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Apr5g0527 553 MobiDBLite consensus disorder prediction 339 361 - -
Apr5g0527 553 MobiDBLite consensus disorder prediction 342 361 - -
Apr5g0527 553 Coils Coil 422 442 - -
Apr5g0527 553 PANTHER RING ZINC FINGER PROTEIN 1 479 - -
Apr5g0527 553 SMART ring_2 292 329 IPR001841 -
Apr5g0527 553 Pfam Ring finger domain 291 330 IPR001841 -
Apr5g0527 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Apr5g0527 553 CDD RING-H2_synoviolin 289 330 - -
Apr5g0527 553 SUPERFAMILY RING/U-box 272 336 - -
Apr5g0527 553 Coils Coil 490 517 - -
Apr5g0527 553 PANTHER - 1 479 - -
Apr5g0527 553 MobiDBLite consensus disorder prediction 524 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0527 Apr-Chr5 6169884 6175238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0527 1 520 C3H Transcription Factor Family AT3G16090 65.524 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0527 K10601 - gmx:100816441 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0527 5 6169884 6175238 Apr5g0527 5 6169884 6175238 ECH