Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0488 ATGGATTCTGTAAATTGCCAAGTAGTTCACAGTGATGATCAATTTCCGAGGCCTTGTCAAAGTCATGAGGTAAATCGTTTGGTTAATAAGTTTTTAGCCTCAATCGGTGCCCTTGAAATTTTCACTGAAGAGATGTGGAAAGCAGCTCTAACAGAGTTAACAGCAACTGCATCTCTTGTGTTCACCTTGACAACATCCATTATTGCATGCTTGGACTCACATGAGGTTGATCCTAAGCTTCTTGTTCCCTTTGCAGTCTTCACCATAGCTTTCTTATTCCTAGTTGTGACAGTTCCTCTATCAGGGGGCCATATGAGTCCTGTTTTCACATTCATTGCTGCTTTAAAGGGTGTTATCACTCTTGATCGTGCGCTCATTTACATATTAGCACAATGCATTGGCTCAATACTTGGTTTTTTAGTACTTAACTATGTAATGGATCCAAAATTAGCTGATACATATTCATTGGGAGGCTGTGCCATTGGTGGCAAAGGAGAAAATTCTGGTGTAAAGCCACAAAATGCTTTGTTATTGGAATTCACTTGCACATTTGTGGTACTATTTGTAGGTGTCACATTGGCATTTGACAAGAAAAGGTCCAAGGAATTGGGCTTGCCAATGGTGTGCTTCGTGGTAGCAGGAGCCATGGCATTGGCAGTATTTGTGTCCATTACTGTAACTGGGCAGGCTGGTTATGCAGGAGTGGGCCTGAACCCAGCAAGATGCTTAGGCCCAGCATTGTTTCGTGGAGGTTCACTTTGGAATGGGCATTGGATTTTTTGGCTTGGGCCTTTCTTGGCTTGCATAGTGTATTTTGCTGTGTCACCAAAAGAGGGTCTGGTTTGGGAGGATGAAGAATATGATGTCCAAAAGTTGTCTATTGGTCCTTCTGGGACTATCCATAACAGTACCGTTGCAAATGATCAATCAGAACATGGTAGTGCAAGGTTCCAAGCCCAAATATGA 966 0.4255 MDSVNCQVVHSDDQFPRPCQSHEVNRLVNKFLASIGALEIFTEEMWKAALTELTATASLVFTLTTSIIACLDSHEVDPKLLVPFAVFTIAFLFLVVTVPLSGGHMSPVFTFIAALKGVITLDRALIYILAQCIGSILGFLVLNYVMDPKLADTYSLGGCAIGGKGENSGVKPQNALLLEFTCTFVVLFVGVTLAFDKKRSKELGLPMVCFVVAGAMALAVFVSITVTGQAGYAGVGLNPARCLGPALFRGGSLWNGHWIFWLGPFLACIVYFAVSPKEGLVWEDEEYDVQKLSIGPSGTIHNSTVANDQSEHGSARFQAQI* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0488 321 PRINTS Major intrinsic protein family signature 47 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr5g0488 321 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr5g0488 321 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr5g0488 321 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr5g0488 321 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr5g0488 321 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr5g0488 321 Pfam Major intrinsic protein 42 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr5g0488 321 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 23 305 - -
Apr5g0488 321 SUPERFAMILY Aquaporin-like 44 270 IPR023271 -
Apr5g0488 321 Gene3D Glycerol uptake facilitator protein. 33 277 IPR023271 -
Apr5g0488 321 PANTHER AQUAPORIN-LIKE 23 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0488 Apr-Chr5 4961165 4962257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0488 100 271 Major Intrinsic Protein MIP AT1G17810 35.795 4.66e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0488 K09866 - gmx:100804160 464.922