Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0482 ATGGATTGTACAGCTGCAAGAAAAACACAAAAGGCTGACCGAGAAAAAATAAGGAGGGATCGACTCAATGAGCAATTTGTGGAACTGGGGAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTTGATGAGACAATTCAATTGCTAAAGGACCTTACTTCTCAAATTAGTAAACTTAAGGATGAATATGCTACCCTAAATGAAGAATCCCGTGAGTTGGCTCAAGAGAAAAATGATCTCAAAGAAGAGAGGGCTTCTCTTAAATCAGATATTGAGAGCTTGAATAATCAGCATCAACCACAGCTTAGAACTATGTGTCCATGGACTGCAATGGATAATTCAGTAACGCTAGCTCCCCCATCATATCCATATCCAGTGCCAATGCCAATGCCAATGCCAATGCCAATACCTCCTGGTCCAATTCCCATGCAATCATACCCCTTCTTTGCTAATCAACGTTCTGCTGTCATCCCTAACCCATATTCAACATATGTTCCTTATTTAGTTCCCAATAACCTTGTTGAACAGCAATCCACCCATTACACATTCCCCCCACTTCATCCAGGTAATCAGTCCTATGTGTCAGGAAAACAAGAATTCAGAAACAAATCATCCAAGGAGAGCAAGGATGAAAAACATGAGGATTCTAATGATGTCACTAAGGACCTTGAGTTGAAGACTCCTGAATCTTCTTCTGATCAGGATTTATCTTTTGGACAAAGGAAATCCAGCCAGTTGTCAAGGAAGGAAAGTGGTTGCACTGAAGTTAGTTTGTTAGGCAGGTGTTCTTCCTCTTGTAGCGTTCAGGATAGCTCATCAAGTAGTGTAGTTCACGAGCGCAAAGGCTCATGA 864 0.4132 MDCTAARKTQKADREKIRRDRLNEQFVELGNILDPDRPKNDKATILDETIQLLKDLTSQISKLKDEYATLNEESRELAQEKNDLKEERASLKSDIESLNNQHQPQLRTMCPWTAMDNSVTLAPPSYPYPVPMPMPMPMPIPPGPIPMQSYPFFANQRSAVIPNPYSTYVPYLVPNNLVEQQSTHYTFPPLHPGNQSYVSGKQEFRNKSSKESKDEKHEDSNDVTKDLELKTPESSSDQDLSFGQRKSSQLSRKESGCTEVSLLGRCSSSCSVQDSSSSSVVHERKGS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0482 287 Coils Coil 46 101 - -
Apr5g0482 287 MobiDBLite consensus disorder prediction 184 256 - -
Apr5g0482 287 PANTHER TRANSCRIPTION FACTOR BHLH121 1 285 IPR044579 GO:0003700|GO:0055072
Apr5g0482 287 Coils Coil 5 25 - -
Apr5g0482 287 SMART finulus 12 62 IPR011598 GO:0046983
Apr5g0482 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 75 IPR036638 GO:0046983
Apr5g0482 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Apr5g0482 287 MobiDBLite consensus disorder prediction 204 233 - -
Apr5g0482 287 MobiDBLite consensus disorder prediction 184 203 - -
Apr5g0482 287 PANTHER TRANSCRIPTION FACTOR BHLH121 1 285 - -
Apr5g0482 287 CDD bHLH_AtILR3_like 11 85 - -
Apr5g0482 287 MobiDBLite consensus disorder prediction 268 287 - -
Apr5g0482 287 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Apr5g0482 287 Gene3D - 4 85 IPR036638 GO:0046983
Apr5g0482 287 MobiDBLite consensus disorder prediction 234 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0482 Apr-Chr5 4924719 4927276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0482 4 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 58.506 3.11e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g0482 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0482 - - gmx:100804250 384.415