LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0461	ATGGACTCCGACCTTGACCCTTTCAGCGACGACGAGGTTGCTAGTTTTGAAGATGATGCTTCGGATCTTCCAAGCATCGACGAGGACGACAACTATTTGGAGGAAGTTGAAAATCCATCCGAAGTTGAGCAAAAAAACTACGCCGTTTTGAGCGAATCCGACGTCAAGCGGCTTCAAGATCTCGACATCAACGAGGTATCGTGTGTTCTATCGATACCAAGAGTTTCCGCGTGCCTTCTGCTCATCCACTACGAGTGGAGTGTGATGAACGTGCACGAAGCGTGGTTCAATGACGAAGAAAGAGTTCGCAAAGCCGTAGGGTTGCTAAAACAGGTTGGGTTTCCACACTCTGAAACCCTAATGTGTGATATCTGCTTCGACGTCGTTTCGTGCGATAGGGTTAAGTCAGCCGGGTGTGGTCATTCATATTGCATCGATTGCTATAAGCAGTATGTGGATACAAGCATCAATGGTGGCCCTGATAAGTGCTTGAAACTTCCATGCCCTCAACCCTCTTGCAAAGTAGCTGTGGATGGAGACATGGTTCGTGAACTTGCGAGTGAGTCAAATAAGAAAAAGTACGATCGGTTTCTGCTTCGATCCTACGTGGAAAACAACAAGAAGATGAAGTGGTGTCCTGGTCCGGGTTGTGATTATGCTGTGAGTTTTGAATCTGACGGTGCTAGAACTAATTCGTTTGTTACTTGTGTTTGTTATCATAGCTTTTGTTGGAGTTGTGGGGAAGAAGCTCATGGCCCTGTGGATTGTGACACTGTGAATAAATGGATCGCTAAGAATAATTCTGAATCTGAGAACACTTCTTGGATTCTTGCCTATACCAAACCCTGCCCTCGATGCAAGAGAGCCATTGAAAAAAACGAAGGGTGCATGCACATGAGATGCAGGTGTGGGTTTGACTTCTGCTGGTATTGTCTTCGTGGTTGGTCTACGTGTAATGCCACAGGTTGCAACCGTTTTACTGATGCTCCAGCTGAGAAATTTGACGCGAAAAAGGAAGAGGATGCGAGGAGAAAAAGGGCGAGTGGTTATTTGGAGAGGTACACTCACTACTATGAGCGTTGGGCTAGCAATGATTTTTCAAGAACAACTGCGCTTAAGCATCTGATTGACCTACGTAATGTGCACATACATAGACTGAGTAGGTTATATCAAAAGTCAGAAGCTAATTTTGAGTTCATAAAAAGGGCGTGGCAACAGGTGATTGAGTGTAGAAGGGCATTGAAATGGAGCTATGCATATGGATACTATCTACCCGAGGGTGAAGAGGCTAAGAAGGAGTTTTTTGAGTACACACAAGGTGAGGCTGAGGCAGCATTGGAAAGGCTTCATCACTGTGCAGAAAATGAACTGTGGAAGTATCTGAATACTGATGAGACAGAAGAAAGTAATGGTTTTCGTTTCAAGCTAACTACTCTAACGAATGTGACCAAGACTTATTTTGAGAATCTTGTGAGGGCGTTGGAGAATGGGTTGGTTGATGTGCATGTTAAAAGCCATGCTGAGTGA	1527	0.4486	MDSDLDPFSDDEVASFEDDASDLPSIDEDDNYLEEVENPSEVEQKNYAVLSESDVKRLQDLDINEVSCVLSIPRVSACLLLIHYEWSVMNVHEAWFNDEERVRKAVGLLKQVGFPHSETLMCDICFDVVSCDRVKSAGCGHSYCIDCYKQYVDTSINGGPDKCLKLPCPQPSCKVAVDGDMVRELASESNKKKYDRFLLRSYVENNKKMKWCPGPGCDYAVSFESDGARTNSFVTCVCYHSFCWSCGEEAHGPVDCDTVNKWIAKNNSESENTSWILAYTKPCPRCKRAIEKNEGCMHMRCRCGFDFCWYCLRGWSTCNATGCNRFTDAPAEKFDAKKEEDARRKRASGYLERYTHYYERWASNDFSRTTALKHLIDLRNVHIHRLSRLYQKSEANFEFIKRAWQQVIECRRALKWSYAYGYYLPEGEEAKKEFFEYTQGEAEAALERLHHCAENELWKYLNTDETEESNGFRFKLTTLTNVTKTYFENLVRALENGLVDVHVKSHAE*	509

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0461	508	MobiDBLite	consensus disorder prediction	1	40	-	-
	Apr5g0461	508	Pfam	Zinc finger, C3HC4 type (RING finger)	122	163	IPR018957	GO:0046872
	Apr5g0461	508	Pfam	Ariadne domain	338	500	IPR045840	-
	Apr5g0461	508	ProSiteProfiles	TRIAD supradomain profile.	118	327	IPR044066	-
	Apr5g0461	508	ProSitePatterns	Zinc finger RING-type signature.	139	148	IPR017907	-
	Apr5g0461	508	MobiDBLite	consensus disorder prediction	1	37	-	-
	Apr5g0461	508	SMART	ibrneu5	192	256	IPR002867	-
	Apr5g0461	508	SMART	ibrneu5	264	318	IPR002867	-
	Apr5g0461	508	Gene3D	-	252	501	-	-
	Apr5g0461	508	SUPERFAMILY	RING/U-box	117	204	-	-
	Apr5g0461	508	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED	25	499	-	-
	Apr5g0461	508	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	25	499	IPR031127	GO:0004842\|GO:0016567
	Apr5g0461	508	Pfam	IBR domain, a half RING-finger domain	192	256	IPR002867	-
	Apr5g0461	508	Pfam	IBR domain, a half RING-finger domain	273	316	IPR002867	-
	Apr5g0461	508	SUPERFAMILY	RING/U-box	193	263	-	-
	Apr5g0461	508	SUPERFAMILY	RING/U-box	275	321	-	-
	Apr5g0461	508	ProSiteProfiles	Zinc finger RING-type profile.	122	169	IPR001841	-
	Apr5g0461	508	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	116	206	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0461	Apr-Chr5	4602597	4604123	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g0461	9	502	ARIADNE family	AT1G65430	50.778	1.01e-173	499

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0461	K11968		-	gmx:100801350	595.504