LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0460	ATGGCAACTGGGAGAACAGTGCAGACACACTATTACGATGTTTTCCTAAGTTTCAGGGGAGAAGATACGCGTCACCTTTTCACCAAAAATCTCTATGATGCTTTGAGAAGAAAGGGAATCAACACCTTCATCGACGACAGGAAATTGGGCAAAGGGAAAAAGATTTCAGCCACCCTTCTTAAAGCCATCGAAAGATCACGCCTCTCCCTCGTCGTTTTTTCCGAAAATTATGCAACTTCCACGTGGTGTCTCGATGAACTTGTCAAGATTGTTGAGTGTAAGGAGCAAAAGAATCAGCCCCTTTGCCCAATCTTCTACAAGGTCGATCCCTCCGATGTACGGCTCCAGAGGAATAGTTATGGGGTAGCCATGGCTACTCTTGAACATAGGTTCAGACATGATTTGCAAAAGGTCAACAAATGGAGGTTCGCTTTGTCTCAAGCTGCCACCTTCTCAGGATGGCATTTTCAACATGGGGATGAATTTATGTTCATTGAAAGGATTGCTGAACAGATATTCAAAACATTACCGCCTAAACGAACACATATCAGTGAGCACATAGTCGGACTCAAGTTTCCTATGGAAGAAGTGAAGTCACTGCTGGATAGTGTGTCTGAATCTGATAATAATGTATGCATGTTGGGAATTCATGGAGCTGGTGGGATTGGCAAGACAACCCTTGCCAAGGCTTTGTATCATTCAACCTTCCACCAATTTGAAGGTTCATGTTTTCTTTTTGATGTCAGAGAAATTTCAAAGCAGTACAAGGGCCTAGTACGTCTCCAACAATCACTTCTATCTGAGATTCTTGAGGAGACAAAAATTAAGGTGGGTAGTGTTGATGAAGGAATCTCTAAAATAAAGCACAGGCTTTGCCATAAAAGAATTCTTCTGGTTCTTGATGATGTTGATGATGTAGAACAGTTAGAAAAACTTGCTGGAAAATGTGACTGGTTTGGCTCGGGTAGCAGGATCATTATAACAGCAAGGGATAAACATCTGCTGACTTCCCCTCATGTCAACAGGACATATCAAATGAAGGGACTGAATGATCATGACGCTCTTGAACTCTTTTCTTGGCATGCCTTTAATATGACTCAACCTGCATCAGGCTATGAAGAAATGTCTAATTATGTAGTAAGTTATGCACAGGGCCTTCCATTGGTTTTAGAAGTAATTGGTTCCAATTTGACTCATAAAAGCTTAGAGGCATGGAAATGTATTTTGAAGCAATATGAGAGTATTCCAGATAGAAACGTTCTGGACATACTGAAAATAAGCTATGACAACTTAGAGGATAATGCAAAGTGTATTTTCTTAGACATTGCTTGTTTCTTCAAAAGGAGGCCTTTGGAATTTGTTGAAGAGATACTAGATGCAAGTGGTTTTGGTGCAAAATTTTACATTGAGGTACTTGTTGATAAATATCTCTTATCTGTCAATGGATTTGGCTGCTTGTGGATGCATGATCTTATCCAAGAAATGGGTAAAGATATTGTTAGAATGGAGGCACCATCAGAACCTGGTCAACGCAGCAGATTATGGTGTCATGATGATATTTGTAGAATACTACATGAAAATTCTGGAAGTAGAAATATTGAAGGAATGATGCTTGATCCTCCAGAAAATGAAGAAGTGGAGTGGAATGGAACTTCCTTTGAAAAGATTAATAATCTTAGAATTCTCATTGTTCGAAACACATGCTTTTCAACTGCCCCCAAGCATCTGCCAAATAACTTGAGGTTGCTTGATTGGGAGGGATATCCTTCAACATCATTACCACAGGGCTTTTATCCCAGAAACATTGTTGTCTTAAAGTTACGCCACAGCCTTTTCAGATTGCAAGAGCCATTGAAGAGATTCGAGTATTTGACAGATATGTATTTCTCACATTGTGAATTCATAACTCAAATACCTGATGTATCTGGAGCACCAAATTTAAGAGAACTGGTTTTTAAGGATTGCTGCAATGTTACAAAGATTCACAATTCTGTTGGATCTCTCTCTAGGCTGATTCAGTTAGATGTCAGTGGTTGCACCAAGCTTATAACCTTTCCCCATAAAATCAAAATGGCATCTCTAGAAATGCTTGATCTCACTGGTTGCAAAAGTCTTAACTACTTCCCAAACATAATAGGAAAGATGGATGCTTTAAAGACAATTCTTGCTGAAGATACCGGTATTAAAGAGCTACCACATTCTATTGGCAATCTATCAGGACTCGAACTTCTAGATATGAATTGTTGCAAGAATCTTAGACATTTACCAAGTAGCTTATTCATGTTGCAAAATCTTGGCTGGCTTCTACTGGGAGATAGTCGACCACGCAGTAGAAAATCATTTAGAAAATCAATGCAAGAGAACCATATGGTAGTAGCTGGACGCCCAAATTTACAATTCTTGAATCTTGAGAACTGTGGCATATTGGATGAAGATCTTCACCTTGTTCTTGATATTTTTTCAAAACTGCAAGGTTTATTTCTATCAGGGAATGATTTTGTTTCCCTTCCAGAATGCATTAAAGAGTGTGCTAATTTGTTAGAACTGGATGTCACTGGTTGCAAGAAGCTTCAAGACATTCCACAGCTTCCCTCAAATTTGAAGATAATAAAGGCTGAGAATTGTACGTCATTGACAACAGAGTCATCAGGCTGGTTATGGTCTCAGGCAATGAACGAGGTTCGTGACTTACTAATCAAAATGCCAGAAACATCAATTCCAGATTGGTTTGATCATCGTTGTGAAGACGGGGCTGTGTCTTTTTGCACACGTGGCAAGTTTCCTTCCATGGCTTTGGCATTTGTTTTAGGACATGGCAATGTGAAAACAGAGGATGACAGAGAGTGCCATGTTGAGGTCTATGTGCGCATTAACGGTCGTGAAGTGCACAGGAAAAATAGTCCAAGCCATTTACACTGTCCAATTATAGAAGGTAATTTGTTATTGTGGGATCTACGACAAATTTTTCGAGAAGCAGAGTGGGAAAGCCTTGGTGCATTACCAATGCATGATTGGAATGATGTGGAAATACAAGCTGTATGTGACTCAACAGATTTCACCATACGTAGCTCTGGTGTTTATGTGTACAAGCAACAAATAAACATGGAAGACATTCAATTCAAGAGTCCCAAATCCATTAACTCCACTGGGTTTTGCTTAACATCCACTAGTATTGCAAGAAATGTGTTAAAACGTAAGAGTTAA	3204	0.3942	MATGRTVQTHYYDVFLSFRGEDTRHLFTKNLYDALRRKGINTFIDDRKLGKGKKISATLLKAIERSRLSLVVFSENYATSTWCLDELVKIVECKEQKNQPLCPIFYKVDPSDVRLQRNSYGVAMATLEHRFRHDLQKVNKWRFALSQAATFSGWHFQHGDEFMFIERIAEQIFKTLPPKRTHISEHIVGLKFPMEEVKSLLDSVSESDNNVCMLGIHGAGGIGKTTLAKALYHSTFHQFEGSCFLFDVREISKQYKGLVRLQQSLLSEILEETKIKVGSVDEGISKIKHRLCHKRILLVLDDVDDVEQLEKLAGKCDWFGSGSRIIITARDKHLLTSPHVNRTYQMKGLNDHDALELFSWHAFNMTQPASGYEEMSNYVVSYAQGLPLVLEVIGSNLTHKSLEAWKCILKQYESIPDRNVLDILKISYDNLEDNAKCIFLDIACFFKRRPLEFVEEILDASGFGAKFYIEVLVDKYLLSVNGFGCLWMHDLIQEMGKDIVRMEAPSEPGQRSRLWCHDDICRILHENSGSRNIEGMMLDPPENEEVEWNGTSFEKINNLRILIVRNTCFSTAPKHLPNNLRLLDWEGYPSTSLPQGFYPRNIVVLKLRHSLFRLQEPLKRFEYLTDMYFSHCEFITQIPDVSGAPNLRELVFKDCCNVTKIHNSVGSLSRLIQLDVSGCTKLITFPHKIKMASLEMLDLTGCKSLNYFPNIIGKMDALKTILAEDTGIKELPHSIGNLSGLELLDMNCCKNLRHLPSSLFMLQNLGWLLLGDSRPRSRKSFRKSMQENHMVVAGRPNLQFLNLENCGILDEDLHLVLDIFSKLQGLFLSGNDFVSLPECIKECANLLELDVTGCKKLQDIPQLPSNLKIIKAENCTSLTTESSGWLWSQAMNEVRDLLIKMPETSIPDWFDHRCEDGAVSFCTRGKFPSMALAFVLGHGNVKTEDDRECHVEVYVRINGREVHRKNSPSHLHCPIIEGNLLLWDLRQIFREAEWESLGALPMHDWNDVEIQAVCDSTDFTIRSSGVYVYKQQINMEDIQFKSPKSINSTGFCLTSTSIARNVLKRKS*	1068

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0460	1067	SMART	till_3	11	151	IPR000157	GO:0007165
	Apr5g0460	1067	Pfam	TIR domain	12	182	IPR000157	GO:0007165
	Apr5g0460	1067	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	965	-	-
	Apr5g0460	1067	ProSiteProfiles	TIR domain profile.	10	176	IPR000157	GO:0007165
	Apr5g0460	1067	Pfam	NB-ARC domain	195	418	IPR002182	GO:0043531
	Apr5g0460	1067	Gene3D	-	11	174	IPR035897	-
	Apr5g0460	1067	PRINTS	Disease resistance protein signature	213	228	-	-
	Apr5g0460	1067	PRINTS	Disease resistance protein signature	290	304	-	-
	Apr5g0460	1067	PRINTS	Disease resistance protein signature	383	397	-	-
	Apr5g0460	1067	PRINTS	Disease resistance protein signature	689	705	-	-
	Apr5g0460	1067	Gene3D	Ribonuclease Inhibitor	545	721	IPR032675	-
	Apr5g0460	1067	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	965	IPR044974	GO:0006952
	Apr5g0460	1067	Gene3D	-	175	342	IPR027417	-
	Apr5g0460	1067	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	442	IPR027417	-
	Apr5g0460	1067	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	154	IPR035897	-
	Apr5g0460	1067	SUPERFAMILY	"Winged helix" DNA-binding domain	419	524	IPR036390	-
	Apr5g0460	1067	Gene3D	-	348	432	IPR042197	-
	Apr5g0460	1067	SUPERFAMILY	L domain-like	536	883	-	-
	Apr5g0460	1067	Gene3D	Ribonuclease Inhibitor	722	899	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0460	Apr-Chr5	4595938	4601351	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g0460	12	770	WRKY Transcription Factor Family	AT4G12020	30.977	3.85e-91	319

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0460	-		-	aprc:113846827	1008.05