Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0459 ATGGACACCGCGGAAGAAGCTTCAGCTTCCCCATCATCCCCTCGATTCTCCGGCACCCGTGGCGTATTCGTGAGTTTCCGGCAGAAAGACACCGGAAACACATTCGCAGCCACTCTATACGACGCTCTCCGGCGGAAGGGACTGAAAGCCGTCCTCGGCGGCAACTCCTCAGCGATTCGCAGCTCAAGGATCGCCATCGTAGTCTTCTCTGAAAATTACGCTTCTTCGAAGCGTTGCCTCACCGAACTAACGAAGATCCTTAAGTGTATGAAGCAAAAGAAGCAAGTGGTGTTCCCAATTTTTTACAAAGTAGAACCCTCTGTTGTACGGCACCAGAGAAAGAGTTACGGAGAAGCCATCGCTAAACACGAAGAGAGGGTCGGAACAGACTCCAACAAGCTCCGAAAATGGAGGTCCTCTCTCAACCAAGCCGCTGGCTTGTCAGGGTGGCATTTTCAAGCTGGATGTGAACTTGAGTTCATTGAAAGGGTTGCTGAAGAGACTTCTGCCCAATTACCTCCCAAACATATAGATATTGGTGAGCGCATTATTGGGCTTCACCCCTGTATTGAACAAGCCAAGTTGCTTTTAGATCTTGCTTCCAACAATGATGTTTGCATGTTAGGAATTTATGGAGAAAGTGGTGTTGGCAAAACCACCCTTGCCAAAGCTTTGTATAATTCCATCCTCCACATGTTTGAAGGTGCATGTTTCATCTTCAATGTCAGAGAAGCTTCCAAGCAGCACAAGGGCATGCTGCGTCTGCAACAAACTCTTCTGTCAGAGATTCTTGAGGAGAAAAAAACTAAGCTGGCCAGTGCTGATGAAGGAATCTCTATGATAAAACACAGGCTTGCCCATAAAAGAGTTCTTTTGGTTCTTGATGATGTTGATGGGATAGAACAGTTGGAAAAGTTAGCAGGAGGGTGTGATTGGTTTGGTTTTGGTAGCAGGATTATTGTAACAACAAGGGATCAACATTTGCTACTTGCCCATCTTGTTGAAAGGACATATCAAATGAAGGGACTCAATGATCGTGATTCTCTTGAGCTTTTTTGTTGGTATGCTTTCAATGCTAGCCAACCTGCAACTGGGTACGAAAATGTGTCTAATCATGTAGTAAGCTATGCGCGGGGCATTCCATTGGTTTTGAAAGGAATAGGCTCCAAGTTGATTAACAGAAGTTTACGGGCATGGGAATGTGCAATGGAACAATACGAGAAGATTCCTGAAACAAAAAGATTGGAGACATTCTTAAAAGATGGTAAAAAGGGATGA 1278 0.4515 MDTAEEASASPSSPRFSGTRGVFVSFRQKDTGNTFAATLYDALRRKGLKAVLGGNSSAIRSSRIAIVVFSENYASSKRCLTELTKILKCMKQKKQVVFPIFYKVEPSVVRHQRKSYGEAIAKHEERVGTDSNKLRKWRSSLNQAAGLSGWHFQAGCELEFIERVAEETSAQLPPKHIDIGERIIGLHPCIEQAKLLLDLASNNDVCMLGIYGESGVGKTTLAKALYNSILHMFEGACFIFNVREASKQHKGMLRLQQTLLSEILEEKKTKLASADEGISMIKHRLAHKRVLLVLDDVDGIEQLEKLAGGCDWFGFGSRIIVTTRDQHLLLAHLVERTYQMKGLNDRDSLELFCWYAFNASQPATGYENVSNHVVSYARGIPLVLKGIGSKLINRSLRAWECAMEQYEKIPETKRLETFLKDGKKG* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0459 425 Gene3D - 342 420 IPR042197 -
Apr5g0459 425 Gene3D - 174 335 IPR027417 -
Apr5g0459 425 ProSiteProfiles TIR domain profile. 5 172 IPR000157 GO:0007165
Apr5g0459 425 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 29 419 - -
Apr5g0459 425 Pfam TIR domain 22 168 IPR000157 GO:0007165
Apr5g0459 425 ProSiteProfiles NACHT-NTPase domain profile. 206 298 IPR007111 -
Apr5g0459 425 CDD AAA 184 300 - -
Apr5g0459 425 Pfam NB-ARC domain 199 407 IPR002182 GO:0043531
Apr5g0459 425 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 419 IPR044974 GO:0006952
Apr5g0459 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 413 IPR027417 -
Apr5g0459 425 PRINTS Disease resistance protein signature 207 222 - -
Apr5g0459 425 PRINTS Disease resistance protein signature 284 298 - -
Apr5g0459 425 PRINTS Disease resistance protein signature 377 391 - -
Apr5g0459 425 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 150 IPR035897 -
Apr5g0459 425 SMART till_3 19 147 IPR000157 GO:0007165
Apr5g0459 425 Gene3D - 19 173 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0459 Apr-Chr5 4590478 4592370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0459 14 389 WRKY Transcription Factor Family AT4G12020 26.842 6.40e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0459 - - aprc:113865259 827.394