Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr5g0454 | ATGGGCAAGTCAAGCAAGAAATCAGCTCCCAAAGTTGACGCTGCTCCCGCTGTTGTTCCGCTATCGAAGTCTGCCAAAAAGGGCAAGAGGCAAGCTGATGATGAACTCGAGAAGCAAGTGAGTGCAAAAAAGCAGAAGATAGAAGAGGTTGCTCAGAAAAAAAAGAAGGAAGAGGTGCAAAAGAAAAAGAAAGAAAGTAGTTCAGATGATTCTTCATCCGAATCTGAAGACGAGAAACCTACACCAAAAATTGCTGAGAAGAAGAAGAAAGAAGTCATTGCTGATAAGCATAAGAAGGAATCAAAGGCACAAAAGAATAAGAAGGAAAGTAGCTCTGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCAGTTCCTTTGAATAAGACTGCTGCTAAAAATGGTGCTCTTAGTACCCCTGCAAAGAAAGGCAAGCCAGCTAGCAGTTCCAGTTCTTCTGAATCATCTGAGGATGACTCCTCTGATGAGGATGAAGTGAGTGCAAAGAAGCAGCAGAAGGGAGTGGTTGCTAAGGTGCAACAAAATAAGAAGGAAAGTAGCTCTGATGATTCTTCTTCAGATTCTGAAGATGAGAAACCTGCAGCAAAAGTTGCTGCTCCTTCCAAAAATCAACCTGCCAAAAATGGGACTACCCCAGCAAAGAAAAGCAAGCCTGTCAGTTCAAGTTCTTCTGAATCCTCAGATGCTTCTGATGAGGATGAAGATCCAAAATCCAAGGTGGTCCCTGCTGCTGTTAAGAATGGACCTGCTTCTATGAAGAAAACTCGGCCAATTGAAAGCTCTGATGAGGATAGCTCCGAGTCTGATTCTGATAGTAGCTCTGATGAGGACGATAATAAGAAAAAAACTGTAACCGCACTGGGCAAAAAGGTGTCTGCTTCTTCAGTTACTCTGGGTAAGAAAATTGAGACCAATGAAAACTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGACAATGACGCAAAGCCAGCTGTAGCTGCTGTCTCAAAGCCTTCGGCTGTTGCTAAAAAGAATGTTGACAACTCAGACTCAGATGATAGCAGCTCTGATGAAGATGAATCTTCTGACAGTGAATCTGAGGATAAAAAGAAAACTGTTAAGGTTTCTAATGCAAACAAGAAACTGGCACCTGTTGTGAAGACTGCTAAAAAGAAGTCTAATCAAAGTTCATCAGAGAGTGATTCTTCTGATGATGAGGGGAAAAAAATGGACATTGATGAGGATGATAGTTCTGATGAAACTGATGAGGAGCCACAAAAGAAAAAGCCTGTGCAAGAAAGTAGTGATAATTCTGAGGACAGTGAGGAAGAAAGTGAGGAGAAGCCCTCCAAAACTCTTCAGAAAATGGCTAGGGATGTGGAGATGGTTGATGCTGCCTCAACTGGAAAGAAAGCTCCAAAAACCCCCGTTACACCAAAAGAACAGAGTGGTGGATCAAAGACACTGTTTGTTGGGAACTTGTCATTTAGTGTCCAACGAGCTGATGTGGAAAATTTCTTCAAAGATTTTGGGGAAGTTGTCGATGTCCGTCTTGCTACAGATGATGATGGGAGGTTTAAAGGGTTTGGACATGTTGAGTTTGCAACAGCAGATGCTGCCCAAAATGCCCTTGAGTTGAATGGACAGGAACTATTACAACGTGCCGTCCGGCTGGATTTAGCCCGAGAAAGGGGTGCATACACCCCCAGTAGCGGCAACTGGAACAACTCCTTCCAGAAGAGTGGAAGAGGCCAATCCCAAACAGTATTTGTAAGGGGTTTTGATAAATCCCTTGGGGAAGATGAGGCGGTCGAGGAAGAGGTGGTGGAAGGGGCCGAGGAACGCCAAATAGACCAAACCTTGCTGCAGAAGGCACTGGAAAAAAGACCACATTTGCTGATGACGACTAAGGTGGCCCATCTTGCGGATACTGAACTATTAATATTTATTGCCCTTTCTTTTCCCAGTAGTTTTTGCTCAGTTTTGGTAATTGTTAGTATGGATTCGTAG | 2016 | 0.433 | MGKSSKKSAPKVDAAPAVVPLSKSAKKGKRQADDELEKQVSAKKQKIEEVAQKKKKEEVQKKKKESSSDDSSSESEDEKPTPKIAEKKKKEVIADKHKKESKAQKNKKESSSDDSSSESEDEKPAVPLNKTAAKNGALSTPAKKGKPASSSSSSESSEDDSSDEDEVSAKKQQKGVVAKVQQNKKESSSDDSSSDSEDEKPAAKVAAPSKNQPAKNGTTPAKKSKPVSSSSSESSDASDEDEDPKSKVVPAAVKNGPASMKKTRPIESSDEDSSESDSDSSSDEDDNKKKTVTALGKKVSASSVTLGKKIETNENSDDESSESSDEDNDAKPAVAAVSKPSAVAKKNVDNSDSDDSSSDEDESSDSESEDKKKTVKVSNANKKLAPVVKTAKKKSNQSSSESDSSDDEGKKMDIDEDDSSDETDEEPQKKKPVQESSDNSEDSEEESEEKPSKTLQKMARDVEMVDAASTGKKAPKTPVTPKEQSGGSKTLFVGNLSFSVQRADVENFFKDFGEVVDVRLATDDDGRFKGFGHVEFATADAAQNALELNGQELLQRAVRLDLARERGAYTPSSGNWNNSFQKSGRGQSQTVFVRGFDKSLGEDEAVEEEVVEGAEERQIDQTLLQKALEKRPHLLMTTKVAHLADTELLIFIALSFPSSFCSVLVIVSMDS* | 672 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr5g0454 | 671 | MobiDBLite | consensus disorder prediction | 1 | 488 | - | - | |
Apr5g0454 | 671 | MobiDBLite | consensus disorder prediction | 26 | 127 | - | - | |
Apr5g0454 | 671 | CDD | RRM1_NUCLs | 490 | 566 | IPR034349 | - | |
Apr5g0454 | 671 | SUPERFAMILY | RNA-binding domain, RBD | 479 | 587 | IPR035979 | GO:0003676 | |
Apr5g0454 | 671 | MobiDBLite | consensus disorder prediction | 184 | 204 | - | - | |
Apr5g0454 | 671 | PANTHER | BNAA08G02930D PROTEIN | 316 | 604 | - | - | |
Apr5g0454 | 671 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 489 | 565 | IPR000504 | GO:0003723 | |
Apr5g0454 | 671 | Gene3D | - | 479 | 594 | IPR012677 | - | |
Apr5g0454 | 671 | MobiDBLite | consensus disorder prediction | 446 | 460 | - | - | |
Apr5g0454 | 671 | MobiDBLite | consensus disorder prediction | 296 | 310 | - | - | |
Apr5g0454 | 671 | Coils | Coil | 33 | 67 | - | - | |
Apr5g0454 | 671 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 491 | 558 | IPR000504 | GO:0003723 | |
Apr5g0454 | 671 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 316 | 604 | - | - | |
Apr5g0454 | 671 | MobiDBLite | consensus disorder prediction | 211 | 234 | - | - | |
Apr5g0454 | 671 | SMART | rrm1_1 | 490 | 561 | IPR000504 | GO:0003723 | |
Apr5g0454 | 671 | MobiDBLite | consensus disorder prediction | 424 | 438 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr5g0454 | Apr-Chr5 | 4553067 | 4559493 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr5g0454 | 481 | 547 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 38.806 | 3.28e-08 | 54.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr5g0454 | K11294 | - | gmx:100779929 | 482.256 |