Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0454 ATGGGCAAGTCAAGCAAGAAATCAGCTCCCAAAGTTGACGCTGCTCCCGCTGTTGTTCCGCTATCGAAGTCTGCCAAAAAGGGCAAGAGGCAAGCTGATGATGAACTCGAGAAGCAAGTGAGTGCAAAAAAGCAGAAGATAGAAGAGGTTGCTCAGAAAAAAAAGAAGGAAGAGGTGCAAAAGAAAAAGAAAGAAAGTAGTTCAGATGATTCTTCATCCGAATCTGAAGACGAGAAACCTACACCAAAAATTGCTGAGAAGAAGAAGAAAGAAGTCATTGCTGATAAGCATAAGAAGGAATCAAAGGCACAAAAGAATAAGAAGGAAAGTAGCTCTGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCAGTTCCTTTGAATAAGACTGCTGCTAAAAATGGTGCTCTTAGTACCCCTGCAAAGAAAGGCAAGCCAGCTAGCAGTTCCAGTTCTTCTGAATCATCTGAGGATGACTCCTCTGATGAGGATGAAGTGAGTGCAAAGAAGCAGCAGAAGGGAGTGGTTGCTAAGGTGCAACAAAATAAGAAGGAAAGTAGCTCTGATGATTCTTCTTCAGATTCTGAAGATGAGAAACCTGCAGCAAAAGTTGCTGCTCCTTCCAAAAATCAACCTGCCAAAAATGGGACTACCCCAGCAAAGAAAAGCAAGCCTGTCAGTTCAAGTTCTTCTGAATCCTCAGATGCTTCTGATGAGGATGAAGATCCAAAATCCAAGGTGGTCCCTGCTGCTGTTAAGAATGGACCTGCTTCTATGAAGAAAACTCGGCCAATTGAAAGCTCTGATGAGGATAGCTCCGAGTCTGATTCTGATAGTAGCTCTGATGAGGACGATAATAAGAAAAAAACTGTAACCGCACTGGGCAAAAAGGTGTCTGCTTCTTCAGTTACTCTGGGTAAGAAAATTGAGACCAATGAAAACTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGACAATGACGCAAAGCCAGCTGTAGCTGCTGTCTCAAAGCCTTCGGCTGTTGCTAAAAAGAATGTTGACAACTCAGACTCAGATGATAGCAGCTCTGATGAAGATGAATCTTCTGACAGTGAATCTGAGGATAAAAAGAAAACTGTTAAGGTTTCTAATGCAAACAAGAAACTGGCACCTGTTGTGAAGACTGCTAAAAAGAAGTCTAATCAAAGTTCATCAGAGAGTGATTCTTCTGATGATGAGGGGAAAAAAATGGACATTGATGAGGATGATAGTTCTGATGAAACTGATGAGGAGCCACAAAAGAAAAAGCCTGTGCAAGAAAGTAGTGATAATTCTGAGGACAGTGAGGAAGAAAGTGAGGAGAAGCCCTCCAAAACTCTTCAGAAAATGGCTAGGGATGTGGAGATGGTTGATGCTGCCTCAACTGGAAAGAAAGCTCCAAAAACCCCCGTTACACCAAAAGAACAGAGTGGTGGATCAAAGACACTGTTTGTTGGGAACTTGTCATTTAGTGTCCAACGAGCTGATGTGGAAAATTTCTTCAAAGATTTTGGGGAAGTTGTCGATGTCCGTCTTGCTACAGATGATGATGGGAGGTTTAAAGGGTTTGGACATGTTGAGTTTGCAACAGCAGATGCTGCCCAAAATGCCCTTGAGTTGAATGGACAGGAACTATTACAACGTGCCGTCCGGCTGGATTTAGCCCGAGAAAGGGGTGCATACACCCCCAGTAGCGGCAACTGGAACAACTCCTTCCAGAAGAGTGGAAGAGGCCAATCCCAAACAGTATTTGTAAGGGGTTTTGATAAATCCCTTGGGGAAGATGAGGCGGTCGAGGAAGAGGTGGTGGAAGGGGCCGAGGAACGCCAAATAGACCAAACCTTGCTGCAGAAGGCACTGGAAAAAAGACCACATTTGCTGATGACGACTAAGGTGGCCCATCTTGCGGATACTGAACTATTAATATTTATTGCCCTTTCTTTTCCCAGTAGTTTTTGCTCAGTTTTGGTAATTGTTAGTATGGATTCGTAG 2016 0.433 MGKSSKKSAPKVDAAPAVVPLSKSAKKGKRQADDELEKQVSAKKQKIEEVAQKKKKEEVQKKKKESSSDDSSSESEDEKPTPKIAEKKKKEVIADKHKKESKAQKNKKESSSDDSSSESEDEKPAVPLNKTAAKNGALSTPAKKGKPASSSSSSESSEDDSSDEDEVSAKKQQKGVVAKVQQNKKESSSDDSSSDSEDEKPAAKVAAPSKNQPAKNGTTPAKKSKPVSSSSSESSDASDEDEDPKSKVVPAAVKNGPASMKKTRPIESSDEDSSESDSDSSSDEDDNKKKTVTALGKKVSASSVTLGKKIETNENSDDESSESSDEDNDAKPAVAAVSKPSAVAKKNVDNSDSDDSSSDEDESSDSESEDKKKTVKVSNANKKLAPVVKTAKKKSNQSSSESDSSDDEGKKMDIDEDDSSDETDEEPQKKKPVQESSDNSEDSEEESEEKPSKTLQKMARDVEMVDAASTGKKAPKTPVTPKEQSGGSKTLFVGNLSFSVQRADVENFFKDFGEVVDVRLATDDDGRFKGFGHVEFATADAAQNALELNGQELLQRAVRLDLARERGAYTPSSGNWNNSFQKSGRGQSQTVFVRGFDKSLGEDEAVEEEVVEGAEERQIDQTLLQKALEKRPHLLMTTKVAHLADTELLIFIALSFPSSFCSVLVIVSMDS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0454 671 MobiDBLite consensus disorder prediction 1 488 - -
Apr5g0454 671 MobiDBLite consensus disorder prediction 26 127 - -
Apr5g0454 671 CDD RRM1_NUCLs 490 566 IPR034349 -
Apr5g0454 671 SUPERFAMILY RNA-binding domain, RBD 479 587 IPR035979 GO:0003676
Apr5g0454 671 MobiDBLite consensus disorder prediction 184 204 - -
Apr5g0454 671 PANTHER BNAA08G02930D PROTEIN 316 604 - -
Apr5g0454 671 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 489 565 IPR000504 GO:0003723
Apr5g0454 671 Gene3D - 479 594 IPR012677 -
Apr5g0454 671 MobiDBLite consensus disorder prediction 446 460 - -
Apr5g0454 671 MobiDBLite consensus disorder prediction 296 310 - -
Apr5g0454 671 Coils Coil 33 67 - -
Apr5g0454 671 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 558 IPR000504 GO:0003723
Apr5g0454 671 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 316 604 - -
Apr5g0454 671 MobiDBLite consensus disorder prediction 211 234 - -
Apr5g0454 671 SMART rrm1_1 490 561 IPR000504 GO:0003723
Apr5g0454 671 MobiDBLite consensus disorder prediction 424 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0454 Apr-Chr5 4553067 4559493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0454 481 547 Eukaryotic Initiation Factors Gene Family AT2G36660 38.806 3.28e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0454 K11294 - gmx:100779929 482.256