Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0435 ATGAGCTCCAGGACAGGCAAGGGGCCTGCTGTCAAAAGTTACAGGCGGAAGAAGACAGTCTTGGACATTGACCTTAACTTACCAGGTGACCCCAACCGTGTACTGGCTGGCGAGAATCGTGAGCTGGAGGGACCTTCAACTCAGTTGGGGCCTCAAGAAGTTCAAGCTGACCAGCAGCCACAGATTACTCAACCTGCAATGATTGATGTCGAGGCCATTGATGATGATGTTGTTGAATGCACCCCAAGGGCTTTTGCTGAGGCGAAAAACAATTCGAGAAGAGTTCGTGGGAGAACTATAGTTGATGTTGATCTAGAAGATCAGACCAGGGTAACCAACAATAATCGCCACAAACGCCGAAGAGAATCACCAAATCAAATGATTATTAATTGTGATATGTATATAAATTTGGAAGGCAGTAGCAGTTCTACGAAGGAAGATGTTAAAAAGCAACCTGAACCTCCAAAGCAGCCTGTCTTCAACTGTCCAATATGTATGGGCCCTTTGGTAGAAGAAATGTCAACAAGATGTGGTCATATTTTTTGCAAAAATTGCATCAAGGCTGCTATAAGTGTTCAGGGTAAATGTCCAACCTGTAGAAAAAAGGTTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAGCTAGTTGA 654 0.4404 MSSRTGKGPAVKSYRRKKTVLDIDLNLPGDPNRVLAGENRELEGPSTQLGPQEVQADQQPQITQPAMIDVEAIDDDVVECTPRAFAEAKNNSRRVRGRTIVDVDLEDQTRVTNNNRHKRRRESPNQMIINCDMYINLEGSSSSTKEDVKKQPEPPKQPVFNCPICMGPLVEEMSTRCGHIFCKNCIKAAISVQGKCPTCRKKVTVKELIRVFLPSAS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0435 217 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Apr5g0435 217 SUPERFAMILY RING/U-box 161 206 - -
Apr5g0435 217 Pfam Zinc finger, C3HC4 type (RING finger) 161 199 - -
Apr5g0435 217 SMART ring_2 162 199 IPR001841 -
Apr5g0435 217 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Apr5g0435 217 MobiDBLite consensus disorder prediction 24 52 - -
Apr5g0435 217 PANTHER ELFLESS, ISOFORM B 5 216 - -
Apr5g0435 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 215 IPR013083 -
Apr5g0435 217 PANTHER RING ZINC FINGER-RELATED 5 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0435 Apr-Chr5 4288926 4293801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0435 15 215 C3H Transcription Factor Family AT5G48655 48.276 6.40e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0435 K22651 - gmx:100792853 320.857