Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0430 ATGGTAGTGATCATGCAGCAGCAACAGCAACAGCAACAGCAACTGCAACACCAGAATCCTTCTGCACTGGTGCCGCAACTCAACAATCCCCAACCCTCCTCCTCCGCCACCGCCACCGCCGCCACCCCTACTTCCCTTAGGTCACCCTCCGCCGCCGCCACCCCGTCCCAGCTCTCGTCGCCCATCTCCGCCGTTCCCCACCGCCAAGCCCTACTCTCCTCACTTCCCGTGTCAGTCGCGGCGGCTCTCCCTTCCGGAGAGCCTGTTTTGACGGCGGCGCCGACGAGTCCGTTGGTCAGAGTCCGGCTCTCGGACATTGCCCCCTATGACGGAGCACCCGCGGGGCCTTATCTCAGAGCAGTGGAAGCATTGTGTGGGTCTCTCTTGCGGCACAATGCTGCGCTGATCGAATTAGGGAGCGAAGATACTGCTCTGATGCGATGTAGCTTGGAGGGTGCAAGGTTGTTTTTCAGGAGTAGGGCCCACCTTGGTGTTGGGAAGGGTAGTCGTGGGGTTTACATGTATAGGGCAGGAAGGGCATTGGAGGATTGGGATTCTTCTCCCCCCTGCATGACTGATATTTTTAGGTGCATGGGAAAGGCGTCTCGTTCCGCCCTTTGTGCCATTGCAAGGCATTTGCGCCTTCGAAGCGATGTCTTTAACCATTTGCTTGATGATGCTCCTTTGCCTGCTAATGAGGTGTCATCGTCAGTTCTTGTTGTAACCTACTCACATTCTTCTTTGCAAAATGGAAAAGGTGCCATTGGAGGCGGTAAGCCTACTATGAATGGTGAAGTTGAGAAGGGACTGTTGACATTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGATCCCAATGGTCGTTGGTATCTGGCAGACAGTGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCAAGGCACTTAGCCATGCCACTGCAGGCCTACGTCCTGCTGCATCATATAGAGCTTCACCTGATTATTTTCTGAATCCTAATGGTGGAGGAAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCACCAATTGCAGCAGCTGGCCATGTTATTCCTCAAAATTATGTTCCAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAACTGACAGGAAGCAGATGCGATAGTGCTGATGTCGCCATTCAAAACAATGTGAATAAGGAGCCATCGTTGAGAAGTGTTCTATCAGATCCTTTGTCTGGTACATTCCTTGAAGATGCCATGCTTGTCTCATGTGGACATTCTTTTGGAGGTCTCATGCTGAGGAGAGTCATTGAAACGTCAAGATGTACTCTTTGCAATGCAGAAATTGAGACCGGCTCTTTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGACGATCGAAGGTTATTTCGTAATGCTGCTCTCCGAAAGCGACGGAAAGAAATGGGGGACCAAATGGATTCAATGAGAAGAGTGAACAGGGAAAATGGAGATTTTACTGCTGTTGATGGACTCCAGCGGGGTGTACAATATCCATTTTCAGTAAATGAGAGAGTCATTATTAAGGGTAACAGGAGGACCCCAGAAAAATTTGTTGGGAAAGAAGCTGTGATTACGTCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGAACTGGAGAGAATGTCCGCCTGCAGTACCGTTCTCTTAGAAAGCCCTTAAACTCACCAGCTATAGAGGACCAGTGCCCCTCACAGCCAATTCAAAATAGCAGCTCTTAA 1782 0.4989 MVVIMQQQQQQQQQLQHQNPSALVPQLNNPQPSSSATATAATPTSLRSPSAAATPSQLSSPISAVPHRQALLSSLPVSVAAALPSGEPVLTAAPTSPLVRVRLSDIAPYDGAPAGPYLRAVEALCGSLLRHNAALIELGSEDTALMRCSLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMTDIFRCMGKASRSALCAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVVTYSHSSLQNGKGAIGGGKPTMNGEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGSGPGDLLLITGKALSHATAGLRPAASYRASPDYFLNPNGGGRLMPQGNAILDCSPIAAAGHVIPQNYVPISVSQFMDDLAAEELTGSRCDSADVAIQNNVNKEPSLRSVLSDPLSGTFLEDAMLVSCGHSFGGLMLRRVIETSRCTLCNAEIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGDQMDSMRRVNRENGDFTAVDGLQRGVQYPFSVNERVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKPLNSPAIEDQCPSQPIQNSSS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0430 593 SUPERFAMILY Clavaminate synthase-like 189 347 - -
Apr5g0430 593 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 88 591 - -
Apr5g0430 593 SUPERFAMILY RING/U-box 402 468 - -
Apr5g0430 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 470 IPR013083 -
Apr5g0430 593 MobiDBLite consensus disorder prediction 1 60 - -
Apr5g0430 593 Gene3D - 165 372 IPR027443 -
Apr5g0430 593 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 88 591 - -
Apr5g0430 593 SUPERFAMILY beta-sandwich domain of Sec23/24 6 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0430 Apr-Chr5 4241495 4248788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0430 402 578 Plant U-box Gene Family AT5G05230 40.678 6.37e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0430 - - gmx:100807199 970.689