Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0427 ATGGCTTCGTCCTTCGTCAAGCTCGATGATTCCCCTATGTTCCAGAAGCAGTTATTTTCTCTTGAAGAAACAGCTGATGAGTTAAAGGATCGGTGCCAGAAACTATACAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATTGCCTTCGCTGATTCATTAGAAGCATTTGGTGGTGGCCAAGATGATCCTATCAGTGTATCAATTGGAGGACCCGTCATATCTAAGTTTATTATCACACTGCGTGAGCTAGCTACTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCACGTGTTGATTGACCGTTTGACGGAGTTTATGAATGTTGATTTGCAAAATGCGAAGGAATCTCGCCGCCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAAAAGTTTGTGTCTTTGAAGAAGAATACGCCGGAAGACATTGTTGCTGAATTAGAAGAGGACCTACAAAATTCAAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGGTTATGACTTGCTGAGCCAAATGGAACCCTATATTCACCAGGTGCTAACATACGCACAACAATCTAAAGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAAAGGATCCAGGAATACAGAACACAGGCAGAGCTGAAAAGCATACGAGCTTCTAGCAACTATACAGATACAAAGCCAGGTTCTGATGGCACCCATGTTGTAGGCTTGAGCTCTTACAAAAACTTTGAAGCAGGGGTGCAGTCTGCAACCAAAGGGGAGGTTCAAACAATTAAACAGGGATATCTGTTAAAACGGTCATCAAGCTTGCGAGGAGATTGGAAACGAAGGTTCTTTGTACTTGATAACCAACGGAATTTATATTATTACAGAGTGAAGGGTGCCAAACCCATGGGCTCTCAGTCATATAATTATACTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCACAACAGGGCAGCATCGCTAAATGAGGATGTTTTAGGTTGTTGTGCAGTTGATCTTTGCACATCCACTATAAAGATGGACGCAGAGGATACCGATCTACGACTTTGTTTCCGAATAATTTCTCCCTCAAAAACATACACACTGCAGGCTGAAAATGAAACTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCGCTTTTTAATTCTCAGTTTCTTCAGCAGCCTCATTATGGTAGATTGCACTTGGAAAATAAAAACTCAACAGTTGGTGCTTCTTTGACAAGTCAATCAGAGGATAGTCACAAATCTTTGATGGATGACATATATTCCAATGAAGTGGGTAGTGTCTCTGAGATCTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAGTGCTGTGCTCCTGCACCAGACTGGGCATCTTTAAACATTGGCATTTTGCTGTGCATTGAATGCTCTGGCGTACATAGAAATCTTGGTGTTCATGTCTCGAAGGTGAGATCCATAACATTAGATGTTAAGGTTTGGGAACCTACCGTTTTGAAGTTATTTGATAACTTAGGTAACACTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTTGAAAATGAAAGAGTAGGTGAATCAAATGTGTCTATGAAACCTTGCTATACAGATGCCTTTCAAGACAAGGAAAAGTACATCCAAGCAAAGTATGTAGAGAAAGCACTAATAATCCGAGAAGAGGATATACCTGGGATCCCTTCAGTTTCTGTTAGAATCTGGGAAGCAGTTCAGACTGTCAATATACGAGAAGTTTATCGCCTTATTGTCACATCAACTTCAAATATGATAAACATGAAATATGATGATGTGGTTCACGATGCTGATGCTGATGCTGAAGGACATCAGCATGAACCTGAAGCCTGTCTGAGAGTTAAAGAAACTAATGAGATAGAGAGGTGTTTCCGAGGTTGGTCCTTGCTACATCTGGCATGTCATTCTGGCAGTGCATTAATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAATTTGCGTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTTCAAGTGGGAAAAATCCATTGGCAAAGTTTCTACTGAGAAGGGGTGCGAGGCCCTCGGTTAAAGATGCTGGCGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATGCCAGTGA 2232 0.4122 MASSFVKLDDSPMFQKQLFSLEETADELKDRCQKLYKGCKKFMTALGEAYNGEIAFADSLEAFGGGQDDPISVSIGGPVISKFIITLRELATFKELLRSQVEHVLIDRLTEFMNVDLQNAKESRRRFDKAVHSYDQSREKFVSLKKNTPEDIVAELEEDLQNSKSTFEKSRFNLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELKSIRASSNYTDTKPGSDGTHVVGLSSYKNFEAGVQSATKGEVQTIKQGYLLKRSSSLRGDWKRRFFVLDNQRNLYYYRVKGAKPMGSQSYNYTRSSEQNSGMFGRFRSRHNRAASLNEDVLGCCAVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENETDRMDWVNKITGAITSLFNSQFLQQPHYGRLHLENKNSTVGASLTSQSEDSHKSLMDDIYSNEVGSVSEILRGIPGNDKCAECCAPAPDWASLNIGILLCIECSGVHRNLGVHVSKVRSITLDVKVWEPTVLKLFDNLGNTYCNSIWEGLLLENERVGESNVSMKPCYTDAFQDKEKYIQAKYVEKALIIREEDIPGIPSVSVRIWEAVQTVNIREVYRLIVTSTSNMINMKYDDVVHDADADAEGHQHEPEACLRVKETNEIERCFRGWSLLHLACHSGSALMVELLLQFGADVNLRDYHGRTPLHHCISSGKNPLAKFLLRRGARPSVKDAGGLTVLERAMEMGAITDEELFIMLAECQ* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0427 743 Gene3D - 583 735 IPR036770 -
Apr5g0427 743 Pfam Putative GTPase activating protein for Arf 451 571 IPR001164 GO:0005096
Apr5g0427 743 ProSiteProfiles Ankyrin repeat profile. 650 682 IPR002110 GO:0005515
Apr5g0427 743 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 174 - -
Apr5g0427 743 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 172 739 - -
Apr5g0427 743 CDD BAR_SFC_plant 16 185 IPR035670 -
Apr5g0427 743 PRINTS HIV Rev interacting protein signature 459 478 IPR001164 GO:0005096
Apr5g0427 743 PRINTS HIV Rev interacting protein signature 478 495 IPR001164 GO:0005096
Apr5g0427 743 PRINTS HIV Rev interacting protein signature 501 522 IPR001164 GO:0005096
Apr5g0427 743 SUPERFAMILY BAR/IMD domain-like 8 286 IPR027267 -
Apr5g0427 743 SUPERFAMILY PH domain-like 217 396 - -
Apr5g0427 743 SMART arf_gap_3 447 578 IPR001164 GO:0005096
Apr5g0427 743 Pfam BAR domain of APPL family 8 169 - -
Apr5g0427 743 ProSiteProfiles Ankyrin repeat region circular profile. 683 714 - -
Apr5g0427 743 SUPERFAMILY ArfGap/RecO-like zinc finger 449 571 IPR037278 -
Apr5g0427 743 SUPERFAMILY Ankyrin repeat 647 736 IPR036770 -
Apr5g0427 743 Pfam PH domain 265 396 IPR001849 -
Apr5g0427 743 Gene3D Arf GTPase activating protein 429 577 IPR038508 -
Apr5g0427 743 Gene3D Arfaptin homology (AH) domain/BAR domain 7 221 IPR027267 -
Apr5g0427 743 CDD ArfGap 451 565 - -
Apr5g0427 743 ProSiteProfiles Ankyrin repeat region circular profile. 650 681 - -
Apr5g0427 743 ProSiteProfiles ARF GTPase-activating proteins domain profile. 447 578 IPR001164 GO:0005096
Apr5g0427 743 CDD PH_ACAP 266 401 - -
Apr5g0427 743 SMART ANK_2a 683 712 IPR002110 GO:0005515
Apr5g0427 743 SMART ANK_2a 650 679 IPR002110 GO:0005515
Apr5g0427 743 Pfam Ankyrin repeats (3 copies) 646 714 IPR002110 GO:0005515
Apr5g0427 743 ProSiteProfiles Ankyrin repeat profile. 683 715 IPR002110 GO:0005515
Apr5g0427 743 PANTHER CENTAURIN/ARF 172 739 IPR045258 GO:0005096
Apr5g0427 743 PANTHER CENTAURIN/ARF 3 174 IPR045258 GO:0005096
Apr5g0427 743 Gene3D - 256 409 IPR011993 -
Apr5g0427 743 ProSiteProfiles PH domain profile. 263 397 IPR001849 -
Apr5g0427 743 SMART 5bar 13 209 IPR004148 GO:0005515|GO:0005737
Apr5g0427 743 SMART PH_update 264 399 IPR001849 -
Apr5g0427 743 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0427 Apr-Chr5 4182472 4209806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0427 459 565 C2H2 Transcription Factor Family AT4G21160 40.741 4.16e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0427 K12489 - gmx:100796740 1291.56