Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0412 ATGGCTTCCCTCTATGAAGTGCTTGGGATTTCAGTGGGTGCAAGCTGCCTCGAAATAAAGGCTGCTTACAGAAAGCTTGCTAGAACGTGCCACCCTGATGTTGTGGCCATGAATCAGAAGGAAAGCTCAGCTAACCAGTTCATGATGATTCATTCAGCTTATTCAACACTCTCTGACCCAGAGAAGCGAGCACAATATGATAGAGAAATCTATAGAGTAAGAAGATCAGCGAATATAGCTTCCATGTCAGGAAGAAATCAGACATTTTCCTATGCCGGAAGGAAATGGGAAACGGACCAATGTTGGTAG 309 0.4434 MASLYEVLGISVGASCLEIKAAYRKLARTCHPDVVAMNQKESSANQFMMIHSAYSTLSDPEKRAQYDREIYRVRRSANIASMSGRNQTFSYAGRKWETDQCW* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0412 102 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Apr5g0412 102 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 102 - -
Apr5g0412 102 PANTHER - 2 102 - -
Apr5g0412 102 SUPERFAMILY Chaperone J-domain 2 73 IPR036869 -
Apr5g0412 102 SMART dnaj_3 2 62 IPR001623 -
Apr5g0412 102 Gene3D DnaJ domain 1 91 IPR036869 -
Apr5g0412 102 PRINTS DnaJ domain signature 5 23 IPR001623 -
Apr5g0412 102 PRINTS DnaJ domain signature 23 38 IPR001623 -
Apr5g0412 102 PRINTS DnaJ domain signature 42 62 IPR001623 -
Apr5g0412 102 PRINTS DnaJ domain signature 62 81 IPR001623 -
Apr5g0412 102 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Apr5g0412 102 CDD DnaJ 5 59 IPR001623 -
Apr5g0412 102 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0412 Apr-Chr5 4004340 4005184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0412 5 67 C2H2 Transcription Factor Family AT1G74250 46.269 4.66e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0412 - - gmx:100798520 183.341