Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0408 ATGTGTCGTTGTGCAACGGGCTGGTGGCCGCTGTTTTTGTCAGGGTGTTTGTTGATTGCTGCTTTAACTACGTTTGACTATGCATCACCTGGATTTTTCATTTTCTTGGGTTGCATGTTGGCATTGATCGTATGGTATTGGGCAAATTTTCTTCTATTAAATCATGGAGAGCAGCACCAGTTACCCGAGAATGAGATAAGAGAATCTCAGAACACAAGGACGAGAGATATTGAATCTGAGTTTACATATAATTCTTTATCCATGATCGGGTCTCGCTTTATGATCAGCAGAGTAATGGCTCCAAGGCAACAACACTATCGGCAAGAAGCACGATTTTTTCCTTTTGCCCCCAAAGCACATATTGCTAGATTAGCCATGAGAGCCTTGCCTCCTACGAAAAGTTTCAATCTAGGTGAGGACAAAACCACTGAATCAGAACGTGATTGTGCCATTTGCATGGAGGAATTTAAGATCGGCGAATTGATTCAACCCTTTGGAGTCTGTGTCCATGAGTTTCATTCCTCTTGTGTTAACTCTTGGTTACACTCTGGAAAAACTACTTGTCCTATTTGCCGTGAGGAATTGTCAATTGCTATCCACTAG 603 0.4212 MCRCATGWWPLFLSGCLLIAALTTFDYASPGFFIFLGCMLALIVWYWANFLLLNHGEQHQLPENEIRESQNTRTRDIESEFTYNSLSMIGSRFMISRVMAPRQQHYRQEARFFPFAPKAHIARLAMRALPPTKSFNLGEDKTTESERDCAICMEEFKIGELIQPFGVCVHEFHSSCVNSWLHSGKTTCPICREELSIAIH* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0408 200 ProSiteProfiles Zinc finger RING-type profile. 149 192 IPR001841 -
Apr5g0408 200 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 108 195 - -
Apr5g0408 200 Pfam Ring finger domain 148 192 IPR001841 -
Apr5g0408 200 PANTHER OS06G0666500 PROTEIN 108 195 - -
Apr5g0408 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 198 IPR013083 -
Apr5g0408 200 SUPERFAMILY RING/U-box 140 197 - -
Apr5g0408 200 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0408 Apr-Chr5 3977721 3978323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0408 121 195 C3H Transcription Factor Family AT4G00305 30.667 2.10e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0408 - K15692 aprc:113865236 424.476