Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0407 ATGAGTGGAAGAGTGAGTGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGGTTTGGATTCATAACCCCTGACGATGGTAGCGAAGAACTCTTCGTTCACCAGTCCCAAATACGATCCGAAGGGTTTCGGAGTCTCGCTGAAGGAGAATCCGTCGAGTTTGCCATAGATTCTGACTCTGACGGTCGCTCTAAGGCCGTTGATGTAACCGGCCCCGATGGCACTAACCTCCAGGGGAGCCGTCGCGGCGGTGGTCCCGGCGGAGGCAACAGGGGCTATGGTGGTGGAAGAGGCGGTGGTTACGGTGGTGGTTACGGCGGCGGCGGCGGACGTGGAGGTGGAGGTGGAAGAGGAGGTGGTGGTGGCGGGGCTTGTTATAACTGCGGCGAGTCGGGTCACATGGCTAGGGACTGCTACCAGGGTGGCGGTGGAGGTAGGTACGGAGGCGGGGGTGGGGGTGGCGGCGGCGGCGGAGGAGGCTGCTACAACTGTGGGGAGTCTGGGCATTTCGCGAGAGATTGCCCTACAAATGCCCGTTGA 537 0.6071 MSGRVSGKVKWFNDQKGFGFITPDDGSEELFVHQSQIRSEGFRSLAEGESVEFAIDSDSDGRSKAVDVTGPDGTNLQGSRRGGGPGGGNRGYGGGRGGGYGGGYGGGGGRGGGGGRGGGGGGACYNCGESGHMARDCYQGGGGGRYGGGGGGGGGGGGGCYNCGESGHFARDCPTNAR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0407 178 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Apr5g0407 178 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Apr5g0407 178 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Apr5g0407 178 Gene3D - 115 146 - -
Apr5g0407 178 Gene3D - 156 178 - -
Apr5g0407 178 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Apr5g0407 178 Pfam Zinc knuckle 123 137 IPR001878 GO:0003676|GO:0008270
Apr5g0407 178 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Apr5g0407 178 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Apr5g0407 178 PANTHER COLD SHOCK PROTEIN 1 4 176 - -
Apr5g0407 178 MobiDBLite consensus disorder prediction 56 102 - -
Apr5g0407 178 Gene3D - 1 82 IPR012340 -
Apr5g0407 178 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Apr5g0407 178 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Apr5g0407 178 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Apr5g0407 178 SUPERFAMILY Retrovirus zinc finger-like domains 115 176 IPR036875 GO:0003676|GO:0008270
Apr5g0407 178 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 176 - -
Apr5g0407 178 SMART csp_8 6 71 IPR011129 GO:0003676
Apr5g0407 178 ProSiteProfiles Zinc finger CCHC-type profile. 160 174 IPR001878 GO:0003676|GO:0008270
Apr5g0407 178 ProSiteProfiles Zinc finger CCHC-type profile. 124 137 IPR001878 GO:0003676|GO:0008270
Apr5g0407 178 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Apr5g0407 178 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0407 Apr-Chr5 3973964 3974799 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Apr5g0407 CSD 2.1e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0407 - K09250 gmx:100799708 191.43