Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0396 ATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACACAAATAAAGGTGCATGGACAAAAGAAGAAGATGATAGACTCATATCTTATATTCGAGCTCACGGCGAAGGTTGTTGGCGCTCTCTCCCCAAAGCCGCTGGCCTTCTCCGATGCGGCAAGAGTTGCCGTCTCCGGTGGATCAACTACCTCCGACCCGACCTCAAACGTGGCAACTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTCCTTGGTAACAAGTGGTCTCTTATAGCTGGAAGATTACCCGGAAGAACAGACAACGAGATAAAGAACTATTGGAACACTCATATAAGAAGAAAGCTTCTGAACAGAGGAATTGACCCTGCAACTCACAGGCCTCTTAATGAAGCTACAAATCAAGAATCTGGTACTGTTACAACTTCTTCTACAACTACGATTTCTTTTGCTAAACAAGAACAAGACAGCACAAACGTTGTTAAAGGGTCTGTCTTAGAACGTTGCCCTGACTTGAACCTTGAACTAACCATTAGTCCTCCGCGTCAACACGAACCTGATCAACCATTCAAGGCCATCGAGAGAAGCCTTTGCTTCGTTTGCAGTTTGGGTTTGCAGAATAGCAAAGATTGCAGCTGTGGGATTGGTAACGTTGTTGCCAACGTTGGTGCTGCCAATACTGCTGCTGGTTCTGTTTCGGCTTCTGCTTATGATTTCTTGGGCTTGAAAACGGGGGTTTGGGATTGCACAACCTTGCAAATGAAATGA 768 0.4557 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEATNQESGTVTTSSTTTISFAKQEQDSTNVVKGSVLERCPDLNLELTISPPRQHEPDQPFKAIERSLCFVCSLGLQNSKDCSCGIGNVVANVGAANTAAGSVSASAYDFLGLKTGVWDCTTLQMK* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0396 255 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr5g0396 255 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr5g0396 255 CDD SANT 69 112 IPR001005 -
Apr5g0396 255 Gene3D - 14 66 - -
Apr5g0396 255 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 218 - -
Apr5g0396 255 CDD SANT 16 61 IPR001005 -
Apr5g0396 255 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr5g0396 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr5g0396 255 SMART sant 66 114 IPR001005 -
Apr5g0396 255 SMART sant 13 63 IPR001005 -
Apr5g0396 255 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Apr5g0396 255 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr5g0396 255 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 218 - -
Apr5g0396 255 Gene3D - 68 142 - -
Apr5g0396 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0396 Apr-Chr5 3867883 3869228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0396 1 255 MYB Transcription Factor Family AT4G38620 58.947 1.10e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g0396 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0396 K09422 - gmx:778030 411.764