Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0379 ATGTTCATATTTGTCATGAAGCTCCAACCACTTTGGATGCTTCTTGTAATGTGCTTCTGTGCACTTATAGTGGCCTCTTCTAATCATGCTAATTCCAATGTGCATGTTTCCTCTGCTTCAGCTACCATACAAAGCAGAGAAACAAATGCTTTGTTGAAGTGGAAAGCCACCCTTGACAACCAAAGCCAAGCTTCCCTCTCTTCATGGACTGGCAATAATCCTTGCAACAACTGGCTGGGAATTGCTTGTGACAAATCCAAATATGTTTCCAACATAAGTCTTCCAAATATTGGATTAAGAGGTACGCTTGAAAGTCTCAACTTCTCATTACTTCCAAACATTCTCATCATAGATTTAAGCAATAACTCCTTCAATGGAAGTATTCCTTCTCATATTGGGACATTGTCCAATCTTGACACTCTTGATTTGTCAACTAATAAACTCTTTGGTAGCATTCCCATTACCATTGGTAATCTGTCTAAACTCTCTCATCTGAAACTTAGTTTCAGTGGTCTGTCTGGGACTATTCCATCTGAAATAACGCAATTGGTTGGCCTTAATACTTTATTGGCTAACATATCGCTTCTCAAGTTACAAAGCAACCAACTTTCTGGTCACATTCCTCGTGAAATTGGGATGTTGGTTAACCTCAAGCTTTTATATCTTGGAAATAACAATCTTTCTGGCTCCATTCCTCATGAAATTGAATTTTTGAAAAATCTTGGTGAACTTGATTTGTCTGAAAACTCTCTCTCTGGTAAAATTCCATCTACAATTGGAAGCGTAATCAGTTTATATTATCTTTATCTTTATGAAAATAATCTATCTGGTCCGATTCCTGAAGAAGTGGGAAATCTCAGTTCTCTGATCACAATCCAATTGTTAAGAAACAACCTGTCTGGCCCAATACCAACTTCCATAGGTAACTTGCTCAATTTGGAATCCATTCAGTTTCAAAATAATCAACTATCTGGTAAAATTCCATCTATAATTGGAAGGTTGATCAATTTACAATATCTTTTACTTTATGGAAATATACTCTCTGGATCCATTCCTTTCACTATTGGAAATTTGTCGAAGCTCAATGGATTAGATTTATTCTCAAATGAACTCTCTGGACAAATCCTACCTACAATTGGAACCTTGATCAATTTACAATATCTTTTCCTTGATGAAAATAAGCTCTCTGAATCCATTCCTTCCACTATTGGAAATTTGTCGAAGCTCAATGTATTAGGTTTATCTTCAAATGAACTCACTGGACAAATCCCACCTTCAATAGGTAATTTAGTCAATTTGAATGGCATTAGTGTTGGTGAAAATAGACTCCGTGGCATGATTCCAATAGAAATGAACAGGCTTCTGAATTTGGAAAGTTTACAACTATATGATAATAATTTTATAGGTCATTTACCTCACAACATTTGCATTGGTGGAAAGTTGGCAAACTTCTCTGCCTACAATAATAAATTCACAGGCCCAATTCCAGAGAGTTTGAAAAATTGCTCCAGCCTTATCAGAGTCAGGCTTCAGAAAAATCAACTAACTGGAGATATAACAGATGCTTTTGGTGTACTTCCAAATTTGAACTACATCGAATTGAGTGAAAACAATTTCTTCGGTCATCTTTCACCAAATTGGGGAAAGTTTCGTAGTCTCGCAAGCCTCGAGATCTCCAACAATCATTTATCAGGAGTTATACCACCAGAACTAAGCAAAGCAACTAATTTGAAGTCACTTAACCTATCTTCAAACCATCTTACAGGAAACATTTCGCAAGAATTATGTAATTTGACCTTGTATGATCTAGCAATCAACAATAATAATCTTTCAGGAAATGTTCCCACACAAATAGCATCAATGAAAGAACTTCAAACATTGGATCTTGGATCAAATAATTTGATTGGCTTAATCCCAAAACAACTTGGAAAGTTGCTCAAATTGTTGAACTTGAATCTAAGCCAAAATGAATTCGAGGGAAATATTCCTTCTGAGCTAGGTGAACTGAAATCTCTTGGAAGTCTTGATCTTAGTGGAAATTCATTGAGTGGAACAATACCACCGATGCTTGCAGAAATGACAATGTTAGAAACATTGAATCTCTCGCACAATAATCTTTCAGGTGATCTCTCTAGCTTTGATGATTTGATAGGCTTGACATCTATTGATATATCATACAACCAATTAGAGGGTCCACTTCCAAACATTCATGTGTTTCACAATGTTACTATTGAAGCATTAAGAAATAATAAAGGCTTGTGTGGTAATGTCACTGGCTTAGAGCCTTGCCCAACATTAAGTGGGAAATCTCATAATCATAAGATTAAGAAAGTCATAATGGTAGTTTTACCATTTACTTTGGGCACTCTAATACTTTCACTATTTGTTTTTGGAGTCTTGCATCATCTATGCCAACCTTCAAAGACAAAAGAATACCAGGTTGCAAAATTTCAAACTCCAAACATATTTGGAATATGGAATTTTGATGGCAAAATGATGTTTGAGAATATTATTGAAGCCACAGAACAGTTTGACGACAAATATCTCATTGGGGTTGGAGGGCAAGGATGTGTTTACAAAGCAAAGTTACCAACGGGTCAAGTTGTTGCTGTGAAGAAACTGCATTCAATTCCAAATGAAGAAAGGCTCAATCAAAAAGCTTTTGAAAGTGAAATCGAAGCTTTGACAAAAATTCGGCATCGTAACATTGTGAGGTTATACGGGTTTTGTTCACATCCACAATTTTCATTTTTGGTGTATGAGTTCCAGGAAAAGGGTAGTGTCGAGAAGATTTTGAAGGATGATGAAGAAGCGATTGCATTTGATTGGCATAAGAGGGTGAATGTTGTGAAAGGTGTAGCCAATGCCTTAAGCTATATGCACCATGCTTGTTCACCTCCAATTGTTCATCGTGATATATCAAGCAAGAATATTCTTTTAGATTTTGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCCAAGCTTCTCAATCCTGATTCTTCTAATTGGACTTCATTCGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCTTACACAATGGAAGTAAATGAGAAATGCGACGTGTATAGTTTTGGAGTCTTAACATTGGAAATACTTTTTGGAGAACATCCTGGTGATGTTATATCTTCTTCACTGTTATCATCTTCATGCCCAGTTGTGCCTTCATCGCTTGATAACATGTCTTTGTCTTTGATGGATAAGTTGGACCAACGTCAACTTCATCCAACAAACCCTATTGCTAAGGAGATGTTAACCATTGCAAAGATAGCAATTGCATGCTTGACTGAAAGCCCACAATCTCGCCCTACCATGGAACAGATTGTTAAAATGCTTTAA 3363 0.3649 MFIFVMKLQPLWMLLVMCFCALIVASSNHANSNVHVSSASATIQSRETNALLKWKATLDNQSQASLSSWTGNNPCNNWLGIACDKSKYVSNISLPNIGLRGTLESLNFSLLPNILIIDLSNNSFNGSIPSHIGTLSNLDTLDLSTNKLFGSIPITIGNLSKLSHLKLSFSGLSGTIPSEITQLVGLNTLLANISLLKLQSNQLSGHIPREIGMLVNLKLLYLGNNNLSGSIPHEIEFLKNLGELDLSENSLSGKIPSTIGSVISLYYLYLYENNLSGPIPEEVGNLSSLITIQLLRNNLSGPIPTSIGNLLNLESIQFQNNQLSGKIPSIIGRLINLQYLLLYGNILSGSIPFTIGNLSKLNGLDLFSNELSGQILPTIGTLINLQYLFLDENKLSESIPSTIGNLSKLNVLGLSSNELTGQIPPSIGNLVNLNGISVGENRLRGMIPIEMNRLLNLESLQLYDNNFIGHLPHNICIGGKLANFSAYNNKFTGPIPESLKNCSSLIRVRLQKNQLTGDITDAFGVLPNLNYIELSENNFFGHLSPNWGKFRSLASLEISNNHLSGVIPPELSKATNLKSLNLSSNHLTGNISQELCNLTLYDLAINNNNLSGNVPTQIASMKELQTLDLGSNNLIGLIPKQLGKLLKLLNLNLSQNEFEGNIPSELGELKSLGSLDLSGNSLSGTIPPMLAEMTMLETLNLSHNNLSGDLSSFDDLIGLTSIDISYNQLEGPLPNIHVFHNVTIEALRNNKGLCGNVTGLEPCPTLSGKSHNHKIKKVIMVVLPFTLGTLILSLFVFGVLHHLCQPSKTKEYQVAKFQTPNIFGIWNFDGKMMFENIIEATEQFDDKYLIGVGGQGCVYKAKLPTGQVVAVKKLHSIPNEERLNQKAFESEIEALTKIRHRNIVRLYGFCSHPQFSFLVYEFQEKGSVEKILKDDEEAIAFDWHKRVNVVKGVANALSYMHHACSPPIVHRDISSKNILLDFEYVAHVSDFGTAKLLNPDSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLTLEILFGEHPGDVISSSLLSSSCPVVPSSLDNMSLSLMDKLDQRQLHPTNPIAKEMLTIAKIAIACLTESPQSRPTMEQIVKML* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0379 1120 Gene3D Transferase(Phosphotransferase) domain 1 924 1120 - -
Apr5g0379 1120 ProSitePatterns Tyrosine protein kinases specific active-site signature. 968 980 IPR008266 GO:0004672|GO:0006468
Apr5g0379 1120 SUPERFAMILY RNI-like 196 539 - -
Apr5g0379 1120 ProSiteProfiles Protein kinase domain profile. 844 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0379 1120 Gene3D Phosphorylase Kinase; domain 1 805 922 - -
Apr5g0379 1120 Pfam Protein kinase domain 846 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g0379 1120 ProSiteProfiles Leucine-rich repeat profile. 695 717 IPR001611 GO:0005515
Apr5g0379 1120 Gene3D Ribonuclease Inhibitor 155 190 IPR032675 -
Apr5g0379 1120 Gene3D Ribonuclease Inhibitor 46 154 IPR032675 -
Apr5g0379 1120 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 244 352 - -
Apr5g0379 1120 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 7 187 - -
Apr5g0379 1120 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 320 1119 - -
Apr5g0379 1120 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 190 262 - -
Apr5g0379 1120 PRINTS Leucine-rich repeat signature 672 685 - -
Apr5g0379 1120 PRINTS Leucine-rich repeat signature 693 706 - -
Apr5g0379 1120 Gene3D Ribonuclease Inhibitor 456 765 IPR032675 -
Apr5g0379 1120 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 190 262 - -
Apr5g0379 1120 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 320 1119 - -
Apr5g0379 1120 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 7 187 - -
Apr5g0379 1120 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 244 352 - -
Apr5g0379 1120 SUPERFAMILY L domain-like 46 190 - -
Apr5g0379 1120 SUPERFAMILY RNI-like 436 738 - -
Apr5g0379 1120 SUPERFAMILY Protein kinase-like (PK-like) 830 1120 IPR011009 -
Apr5g0379 1120 SMART LRR_typ_2 693 715 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 454 478 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 621 645 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 406 430 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 238 262 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 669 692 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 214 237 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 550 574 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 135 159 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 310 334 IPR003591 -
Apr5g0379 1120 SMART LRR_typ_2 382 405 IPR003591 -
Apr5g0379 1120 Pfam Leucine rich repeat 671 729 IPR001611 GO:0005515
Apr5g0379 1120 ProSiteProfiles Leucine-rich repeat profile. 576 599 IPR001611 GO:0005515
Apr5g0379 1120 Pfam Leucine rich repeat N-terminal domain 46 84 IPR013210 -
Apr5g0379 1120 Gene3D Ribonuclease Inhibitor 282 375 IPR032675 -
Apr5g0379 1120 Gene3D Ribonuclease Inhibitor 191 281 IPR032675 -
Apr5g0379 1120 Gene3D Ribonuclease Inhibitor 376 455 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0379 Apr-Chr5 3578521 3582384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0379 190 1016 Receptor kinase-like Gene Family AT4G08850 45.629 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr5g0379 Pkinase 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0379 - - gmx:100808316 1364.75