Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0378 ATGGGTTTTCGTTTACTGGGTGTCAGAAAGGCATCTTTTGCTGCAAACCAAATAGCTTCAAAATCTGTAGAAGTACCAAAGGGCTATCTTGCAGTGTATGTTGGAGAGAACGTGAAGCGGTTCGTGATCCCCATATCATACTTGAACCAACCTTCATTCCAAGACTTGTTGAGTCAAGCTGAGGAAGAATTTGAATATGATCATCCCATGGGTGGTCTCACAATTCCTTTTCAAATATTTCTTTCTAACACAAGCCCTTGCTTTCGTTTTATTTTTCTTGGTGTGTTGCAACTCAAAACAATGGGCTTCCACTTACCTGGTATTAGAAGGGCATCTTTAACCAAAGCAGCTTCCAAGGCTGTGGAAGTACCTAAAGGCTATCTTGCAGTCTATGTTGGGGAGAAAATGAAGCGGTTTGTTATTCCTATTTCATATTTGAATCAACCTTTATTTCAAGAATTACTAAGCCAAGTTGAAGAAGAATTTGGATATGATCATCCGATGGGAGGTCTCACAATTCCTTGCATTGAAGAAACTTTCTTAGACCTCACTTCTCGTTTGAATGTGCTATAG 573 0.3962 MGFRLLGVRKASFAANQIASKSVEVPKGYLAVYVGENVKRFVIPISYLNQPSFQDLLSQAEEEFEYDHPMGGLTIPFQIFLSNTSPCFRFIFLGVLQLKTMGFHLPGIRRASLTKAASKAVEVPKGYLAVYVGEKMKRFVIPISYLNQPLFQELLSQVEEEFGYDHPMGGLTIPCIEETFLDLTSRLNVL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0378 190 Pfam Auxin responsive protein 112 186 IPR003676 GO:0009733
Apr5g0378 190 Pfam Auxin responsive protein 12 78 IPR003676 GO:0009733
Apr5g0378 190 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 101 188 IPR003676 GO:0009733
Apr5g0378 190 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 77 IPR003676 GO:0009733
Apr5g0378 190 PANTHER AUXIN-INDUCED PROTEIN 6B 101 188 - -
Apr5g0378 190 PANTHER AUXIN-INDUCED PROTEIN 6B 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0378 Apr-Chr5 3539282 3541258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0378 24 79 Calmodulin-binding Proteins AT3G43120 53.571 3.62e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0378 - K14488 aip:110269930 244.202