Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0355 ATGCGAACCCTTTGCGACGTATGTGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCCGATGAGGCTGCTCTATGTTCTGCATGTGACCACAAGATCCATATGTGTAACAAACTTGCAAGCAGACATATTCGGGTTGGCCTTGCTGATCCCACAGATGTTCCACGTTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGACATGATTGTACATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTGTTGAGGCAGAGAGTTGAGTTTCCAGGTGACAAACCAGCTCAAATGGAAGAGCTAGGGCTGCAACCCCTCGATCAAAATGAATCAAGGAAGGACGAAAGTCAGTCACTCAAGCTAAAAACAAGCGATTGTCAGCAAAATCACAGTGTCTCACCTGTTCCTAGGCAAGAAAATAATATTGATTGTCATGGAAAAGTAGGTAAAAAATTCATTGATCTTAATACTAGGCCACTGCGGTTAAATGGATTGGCAACAATCAACCAGAATATGGATATTTTTAGAGGCAATAATCATGAACCTGCAAGTGCACCCCAAGTAGAATCCTTCCAACAAGAGGCTGAGAAGTAA 633 0.4344 MRTLCDVCESAAAILFCAADEAALCSACDHKIHMCNKLASRHIRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGDKPAQMEELGLQPLDQNESRKDESQSLKLKTSDCQQNHSVSPVPRQENNIDCHGKVGKKFIDLNTRPLRLNGLATINQNMDIFRGNNHEPASAPQVESFQQEAEK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0355 210 MobiDBLite consensus disorder prediction 189 210 - -
Apr5g0355 210 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 210 - -
Apr5g0355 210 MobiDBLite consensus disorder prediction 134 151 - -
Apr5g0355 210 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Apr5g0355 210 SMART bboxneu5 1 47 IPR000315 GO:0008270
Apr5g0355 210 SMART bboxneu5 51 96 IPR000315 GO:0008270
Apr5g0355 210 Gene3D Classic Zinc Finger 2 96 - -
Apr5g0355 210 MobiDBLite consensus disorder prediction 119 133 - -
Apr5g0355 210 CDD Bbox1_BBX-like 4 47 - -
Apr5g0355 210 CDD Bbox1_BBX-like 56 96 - -
Apr5g0355 210 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Apr5g0355 210 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Apr5g0355 210 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr5g0355 210 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 210 - -
Apr5g0355 210 MobiDBLite consensus disorder prediction 114 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0355 Apr-Chr5 3312786 3315932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0355 1 210 C2C2-CO-like Transcription Factor Family AT4G38960 56.190 1.80e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Apr5g0355 zf-B_box 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0355 - - gmx:100527369 382.874